| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,497,097 – 22,497,192 |
| Length | 95 |
| Max. P | 0.815062 |
| Location | 22,497,097 – 22,497,192 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.14 |
| Shannon entropy | 0.44010 |
| G+C content | 0.50955 |
| Mean single sequence MFE | -30.49 |
| Consensus MFE | -20.93 |
| Energy contribution | -20.24 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22497097 95 - 27905053 UUUUCGUAGUCGCUGCCAUGGCCAA---CCAGAUAAAAUUUUCAACCAGGAAGUUGGCUUCCUGUGGCGCUCUGGUCGUGAUUCUGCUUCUGGUUCUG------ .....((((((((.((((.(((...---(((((........))...(((((((....)))))))))).))).)))).))))..))))...........------ ( -29.50, z-score = -1.95, R) >droSim1.chr3R 22326117 95 - 27517382 UUCUCGUAGUCGCUGCCAUGGCCAA---CCAGAUAAAAUUUUCAACCAGGAAGUUGGCUUCCUGUGGCGCUCUGGUCGUGAUUCUGCUUCUGGUUCUG------ .....((((((((.((((.(((...---(((((........))...(((((((....)))))))))).))).)))).))))..))))...........------ ( -29.50, z-score = -1.95, R) >droSec1.super_13 1271248 95 - 2104621 UUUUCGUAGUCGCUGCCAUGGCCAA---CCAGAUAAAAUUUUCAACCAGGAAGUUGGCUUCCUGUGGCGCUCUGGUCGUGAUUCUGCUUCUGGUUCUG------ .....((((((((.((((.(((...---(((((........))...(((((((....)))))))))).))).)))).))))..))))...........------ ( -29.50, z-score = -1.95, R) >droAna3.scaffold_13340 6859996 86 + 23697760 ------------UUUUUGUAGUCGC---CCAGAUAAAAUUUUCAACCAGGAAGUUGGCUUCCUGUGGUGCUCAGUUC-UGCUCCUGCUUCUGGCACUGCCAC-- ------------.....(((((.((---(.(((.............(((((((....))))))).((.((.......-.)).))....)))))))))))...-- ( -27.10, z-score = -2.15, R) >dp4.chr2 10513486 101 - 30794189 UUUUGGUAGUCGCUGCCAGGACCGC---CCAGAUAAAAUUUUCAACCAGGAAGUUGGCUUCCUGUGGCGCGCUGGUUCUGCUUUUGGCUCUGCUGCUGCUGGCA ..(..(((((.((.(((((((..((---(((((........))...(((((((....)))))))))).))((.......)))))))))...)).)))))..).. ( -36.90, z-score = -0.68, R) >droPer1.super_0 1855408 101 + 11822988 UUUUGGUAGUCGCUGCCAGGACCGC---CCAGAUAAAAUUUUCAACCAGGAAGUUGGCUUCCUGUGGCGCGCUGGUUCUGCUUUUGGCUCUGCUGCUGCUGGCA ..(..(((((.((.(((((((..((---(((((........))...(((((((....)))))))))).))((.......)))))))))...)).)))))..).. ( -36.90, z-score = -0.68, R) >droWil1.scaffold_181130 9963790 93 + 16660200 UUGUAGUUGUUGUUGGCAGGGCUGCUGUCCAGAUAAAAUUUUCAACCAGGAAGUUGGCUUCCUGUGGCGCUUUGGCUCUCGUUCUGGUUCUGG----------- ..((((((.(((....)))))))))...(((((.............(((((((....))))))).(((......))).....)))))......----------- ( -24.00, z-score = 0.49, R) >consensus UUUUCGUAGUCGCUGCCAUGGCCGC___CCAGAUAAAAUUUUCAACCAGGAAGUUGGCUUCCUGUGGCGCUCUGGUCCUGAUUCUGCUUCUGGUUCUG______ ................((((((((....(((((........))...(((((((....)))))))))).....))))))))........................ (-20.93 = -20.24 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:24 2011