| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,743,892 – 8,743,992 |
| Length | 100 |
| Max. P | 0.555578 |
| Location | 8,743,892 – 8,743,992 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.29 |
| Shannon entropy | 0.43403 |
| G+C content | 0.52154 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -19.17 |
| Energy contribution | -19.25 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8743892 100 + 23011544 AUCAGCCGU-GGAGGUGUCAGUGUACAAAGGACGCGCCCU--GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGC---UGCAGCGAA--AAGUUUUCCCGAGCGAAA------- ..((((..(-(((((..((((((.((...(((((((....--....)))))))...)).))))))..).)))))))---)).......--..((((....))))....------- ( -34.40, z-score = -1.35, R) >droSim1.chr2L 8522780 100 + 22036055 AUCAGCCGU-GGAGGUGUCAGUGUACAAAGGACGCGCCCU--GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGC---UGCAGCGAA--AAGUUUUCCCGGGCGAAA------- ....(((.(-(((((..((((((.((...(((((((....--....)))))))...)).))))))..).)))))((---....))...--...........)))....------- ( -36.40, z-score = -1.26, R) >droSec1.super_3 4217236 100 + 7220098 AUCAGCCGU-GGAGGUGUCAGUGUACAAAGGACGCGCCCU--GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGC---UGCAGCGAA--AAGUUUUCCCGGGCGAAA------- ....(((.(-(((((..((((((.((...(((((((....--....)))))))...)).))))))..).)))))((---....))...--...........)))....------- ( -36.40, z-score = -1.26, R) >droYak2.chr2L 11385712 100 + 22324452 AUCAGCCGU-GGAGGUGUCAGUGUACAAAGGACGCGUUCU--GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGC---UGCAGCGAA--AAGUUUUCCCCAGAAGAA------- ..((((..(-(((((..((((((.((...((((((((...--...))))))))...)).))))))..).)))))))---)).......--...(((((....))))).------- ( -36.10, z-score = -2.46, R) >droEre2.scaffold_4929 9330307 100 + 26641161 AUCAGCCGU-GGAGGUGUCAGUGUACAAAGGACGCGUCCU--GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGC---UGCAGCGAA--AAGUUUUCCCGAGCAGAA------- ........(-(((((..((((((.((...((((((((...--...))))))))...)).))))))..).))))).(---(((.(.(((--.....))).)..))))..------- ( -36.10, z-score = -1.97, R) >droAna3.scaffold_12916 10381925 100 + 16180835 AUCAGCCAU-GGAGGUGUCAGGAUACAAAGGACGCGCCCU--GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGC---UGCAGCUAAGAAACUUUUCUCCAGAAG--------- ..((((..(-(((((..((((...((...(((((((....--....)))))))...))...))))..).)))))))---))...((.((((....))))..))...--------- ( -31.60, z-score = -1.27, R) >dp4.chr4_group5 1527362 103 - 2436548 AUCAGCCAU-AGAGGUGUCAAUAUACAAAGGACGCGCCCU--GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGCAC-UGCAUCGAA--ACUUUUGCCAAAGCAGAAA------ ....((...-((.((..((((((.((...(((((((....--....)))))))...)).))))))..))))...))..-.........--..((((((....)))))).------ ( -31.50, z-score = -2.29, R) >droPer1.super_5 1495613 103 - 6813705 AUCAGCCAU-AGAGGUGUCAAUAUACAAAGGACGCGCCCU--GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGCAC-UGCAUCGAA--ACUUUUGCCAAAGCAGAAA------ ....((...-((.((..((((((.((...(((((((....--....)))))))...)).))))))..))))...))..-.........--..((((((....)))))).------ ( -31.50, z-score = -2.29, R) >droWil1.scaffold_180772 8887151 112 - 8906247 AUCAGGCAUUGAAGGUGUCAAUAUACAAAAGAAGCGCUCUCUGACACGCGUCUGACGUUUAUUG---CCCUCCGGCUGACGACAUGAAAACUUUUUGGCGGAGCAUCAAGAGGAA .(((((((((((.....)))))...........(((..........)))))))))((((....(---((....))).)))).........((((((((.......)))))))).. ( -24.10, z-score = 1.34, R) >droGri2.scaffold_15126 7732235 86 + 8399593 AUCCGCCAU-UAAGGUGUCAAUAUACAAAAGG---------------AUGUCUGACAUUUAUUG---CCCUGCGGU---UGAGGCGCAUAAAGUUUUCUUGGGUGUCC------- ..((((((.-..((((((((((((........---------------)))).))))))))..))---....)))).---...(((((...(((....)))..))))).------- ( -19.20, z-score = 0.22, R) >consensus AUCAGCCAU_GGAGGUGUCAGUAUACAAAGGACGCGCCCU__GACACGCGUCUGACGUUUAUUGGUGCCCUCCAGC___UGCAGCGAA__AAGUUUUCCCGAGCAGAA_______ .............((..((((((.((...(((((((..........)))))))...)).))))))..)).............................................. (-19.17 = -19.25 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:49 2011