| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,475,907 – 22,476,006 |
| Length | 99 |
| Max. P | 0.839703 |
| Location | 22,475,907 – 22,476,006 |
|---|---|
| Length | 99 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.17 |
| Shannon entropy | 0.58445 |
| G+C content | 0.44621 |
| Mean single sequence MFE | -21.87 |
| Consensus MFE | -11.94 |
| Energy contribution | -11.85 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22475907 99 - 27905053 -----CCUUAAGUUGUAAAUUGCCCCGAAUUGUACAAAAUAAUUUACACAUUACCA---GGCCCCAUGACUCACGAUGGUCGUUGGUCGUUUUCCCCUCUCAGCCCC----------- -----......((((...........(((((((.....)))))))..........(---((....((((((.(((.....))).)))))).....)))..))))...----------- ( -14.90, z-score = 0.37, R) >droGri2.scaffold_14906 13092552 88 + 14172833 -----GCCAGUGUUGUAAAUUGUCUCAAAUUGUAUGAAAUAAUUUACACAUUAC----CAGGCCCAUGACUCAAGACGGUCGUUUGCCGUUGCCAUC--------------------- -----((.(((((.(((((((((.(((.......))).))))))))))))))..----..(((..((((((......))))))..)))...))....--------------------- ( -23.10, z-score = -2.43, R) >droVir3.scaffold_12822 638406 104 + 4096053 -----GCCGGUGUUGUAAAUUGUCUCAAAUUGUAUGAAAUAAUUUACACAUUACCAGACAGACCCAUGACUCAAGACGGUCGUUGGCCAACGCUGUCGCUAUCCCUGUC--------- -----((.((((.((((((((((.(((.......))).))))))))))...)))).(((((.((.((((((......)))))).))......)))))))..........--------- ( -28.70, z-score = -2.35, R) >droPer1.super_0 1832824 87 + 11822988 ACUCGGGCACUGUUGUAAAUUGUCCAGGAUUGUAGGAAAUAAUUUACACAUUACCA---GG-UCCAUGACUCACAACGGUCGUUGGCCGUG--------------------------- ....((....(((.(((((((((((.........)))..)))))))))))...)).---((-((.((((((......)))))).))))...--------------------------- ( -23.20, z-score = -0.75, R) >dp4.chr2 10490911 87 - 30794189 ACUCGGGCACUGUUGUAAAUUGUCCAGGAUUGUAGGAAAUAAUUUACACAUUACCA---GG-UCCAUGACUCACAACGGUCGUUGGCCGUG--------------------------- ....((....(((.(((((((((((.........)))..)))))))))))...)).---((-((.((((((......)))))).))))...--------------------------- ( -23.20, z-score = -0.75, R) >droAna3.scaffold_13340 6838138 94 + 23697760 -----GGCCCAGUUGUAAAUUGUCCCGAAUUGUACGAAAUAAUUUACACAUUACCA---GG-CCCAUGACUCACAACGGUCAUUGGCCUCGCACCAAUCUUCU--------------- -----.((...((.(((((((((..((.......))..)))))))))))......(---((-((.((((((......)))))).))))).))...........--------------- ( -25.40, z-score = -3.12, R) >droEre2.scaffold_4820 4892278 108 + 10470090 -----CCUUAAGUUGUAAAUUGUCCCGCAUUGUACAAAAUAAUUUACACAUUACCA---GG-CCCAUGACUCACGAUGGUCGUUGGUCGUUGGUCGUUUUCCCUUCUGU-AUCCUUGC -----...((((.((((((((((...............))))))))))........---((-((.((((((.(((.....))).)))))).))))..............-...)))). ( -22.76, z-score = -0.90, R) >droYak2.chr3R 4809900 109 + 28832112 -----CCUUAAGUUGUAAAUUGUCCCGAAUUGUACCAAAUAAUUUACACAUUACCA---GG-GCCAUGACUCACGAUGGUCGUUGGUCGUUGCUCGUUCUCCCUUCUGUGAACCUUGU -----...((((.((((((((((...............))))))))))........---((-((.((((((.(((.....))).)))))).))))((((.(......).)))))))). ( -24.46, z-score = -0.99, R) >droSim1.chr3R 22304512 102 - 27517382 -----UCUUAAGUUGUAAAUUGUCCCGAAUUGUACAAAAUAAUUUACACAUUACCG---GGCCCCAUGACUCACGAUGGUCGUUGGCUGUUUUCCCCUCUCAGCCCCUUU-------- -----......((.(((((((((...............)))))))))))......(---(.....((((((......)))))).(((((...........)))))))...-------- ( -17.76, z-score = 0.03, R) >droSec1.super_13 1250314 102 - 2104621 -----CCUUAAGUUGUAAAUUGUCCCGAAUUGUACAAAAUAAUUUACACAUUACCA---GGCCCCAUGACUCACGAUGGUCGUUGGUUGUUUUCCCCUCUCAGCCCCUUU-------- -----((((((..((((((((((...............))))))))))..)))..)---))....((((((......)))))).(((((...........))))).....-------- ( -15.26, z-score = 0.33, R) >consensus _____GCCUAAGUUGUAAAUUGUCCCGAAUUGUACGAAAUAAUUUACACAUUACCA___GG_CCCAUGACUCACGACGGUCGUUGGCCGUUGCCCCCUCUC____C____________ ...........((.(((((((((...............)))))))))))..........((.((.((((((......)))))).)))).............................. (-11.94 = -11.85 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:19 2011