| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,472,770 – 22,472,864 |
| Length | 94 |
| Max. P | 0.916974 |
| Location | 22,472,770 – 22,472,864 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 77.05 |
| Shannon entropy | 0.43391 |
| G+C content | 0.25708 |
| Mean single sequence MFE | -13.92 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22472770 94 + 27905053 AUUCGGUUU-ACUUUUUUA-UUUAGUUCUUAGUGUAUGCAAUCAGUAAAUUUGCAUGCACACCUAUUCGUAAUGUAUAAUUUAUAAAUGUAAUCAA---- ....((((.-((.......-...........((((((((((.........))))))))))....(((..(((........)))..)))))))))..---- ( -16.30, z-score = -1.92, R) >droSec1.super_13 1247171 94 + 2104621 AUUCGGUUU-ACUCUUUUA-UUUAGUUCUUAUUGUAUGCAAUCAGUAAAUUUGCAUGCACACCUAUUCGUAAUGUAUAAUUUAUAAAUGUAAUCAA---- ....((((.-((.......-............(((((((((.........))))))))).....(((..(((........)))..)))))))))..---- ( -12.40, z-score = -0.77, R) >droSim1.chr3R 22301359 94 + 27517382 AUUCGGUUU-ACUUUUUUA-UUUAGUUCUUAGUGUAUGCAAUCAGUAAAUUUGCAUGCACACCUAUUCGUAAUGUAUAAUUUAUAAAUGUAAUCAA---- ....((((.-((.......-...........((((((((((.........))))))))))....(((..(((........)))..)))))))))..---- ( -16.30, z-score = -1.92, R) >droYak2.chr3R 4806600 100 - 28832112 AUUCGGUUUUACUCCUUUAAUUUAGUUCUAAGUGUAUGCAAUCAGUAAAUUUGCAUGCACACCUAUUCGUAAUGUAUAAUUUAUAAAUGUAAUCAAUUUU ....((((.......................((((((((((.........))))))))))...((((..(((........)))..)))).))))...... ( -16.00, z-score = -1.91, R) >droEre2.scaffold_4820 4889095 96 - 10470090 AUUCGGUUUUACGUUUUUAAUUUAGUUCUUAGUGUAUGCAAUCAGUAAAUUUGCAUGCACACCUAUUCGUAAUGUAUAAUUUAUAAAUGUAAUCAA---- ........((((((((.(((.(((.......((((((((((.........))))))))))((......))......))).))).))))))))....---- ( -19.20, z-score = -2.71, R) >anoGam1.chrX 20361517 82 + 22145176 ----------AUUAAGUAGCUUUUGUCUUUAAU-UAUAACAUCUCAGUUUUUUCUUACAUAUUAUUCCACAGUUAUUGGUUUACUAUCCU--UCA----- ----------..((((.((((..(((..(....-.)..)))....))))....)))).(((.((..(((.......)))..)).)))...--...----- ( -3.30, z-score = 0.77, R) >consensus AUUCGGUUU_ACUUUUUUA_UUUAGUUCUUAGUGUAUGCAAUCAGUAAAUUUGCAUGCACACCUAUUCGUAAUGUAUAAUUUAUAAAUGUAAUCAA____ ...............................((((((((((.........))))))))))........................................ (-10.30 = -10.50 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:19 2011