| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,468,887 – 22,468,983 |
| Length | 96 |
| Max. P | 0.622149 |
| Location | 22,468,887 – 22,468,983 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 50.20 |
| Shannon entropy | 0.93141 |
| G+C content | 0.28441 |
| Mean single sequence MFE | -15.27 |
| Consensus MFE | -2.79 |
| Energy contribution | -3.20 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.18 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22468887 96 + 27905053 ------UUGAGUUAUUAUUAGUGCGAUGUUCGCACAGAAAACACGAAAUUUUAAUUUCAAUUAACAAGAUAACCAAAGUUAAUUUUCUAAACUCAAAAAUAG------ ------(((((((.......(((((.....)))))((((((...(((((....)))))..(((((............))))))))))).)))))))......------ ( -21.20, z-score = -4.38, R) >droEre2.scaffold_4820 4885189 92 - 10470090 ------UUGAAUU-UAACAAGUGCGACGUUUGCAAAGUGAACAAGAAAUUUUAAUUUCAAUUAG-------GGCCAAUUUAAUUUUCUAAAUUCCAAAAUAGACUG-- ------..(((((-((.((..(((((...)))))...)).....(((((....)))))((((((-------(.....)))))))...)))))))............-- ( -10.30, z-score = 0.75, R) >droSim1.chr3R 22297471 87 + 27517382 ------UUGAGUUUUUAUUAGUGCGAAGUUCGC---------ACGAAAUUUUAAUUUCAAUUAACAAGAUAGCCAAAGUAAAAUUUCUAAACUCAAAAAUAG------ ------((((((((......(((((.....)))---------))(((((((((.......(((......)))......))))))))).))))))))......------ ( -19.52, z-score = -3.94, R) >droSec1.super_13 1243303 96 + 2104621 ------UUGAGUUUUUAUUAGUGCGACGUCCGCACAGCAAACACGAAAUUUUAAUUUCAAUUAACAAGACUGCCAAAGUAAAUUUUCUAAACUCAAAUAUAG------ ------((((((((......(((((.....))))).........(((((....)))))..........(((.....))).........))))))))......------ ( -17.20, z-score = -2.40, R) >droAna3.scaffold_12943 4996165 104 - 5039921 UUGACGACCUUUCGUAGUA-AUACACGUUACAUGUUUAAAAAACGGCAUUUGAGCUUUUAACAUAAAA--UGAAGAGUU-CUGGCUCUCACAACAAAUUUGAAAAUCG ....(((..(((((((...-.)))..((((...(((((((........)))))))...))))......--(((.((((.-...)))))))..........)))).))) ( -16.90, z-score = -0.37, R) >droMoj3.scaffold_6359 2582476 76 - 4525533 -------------AAAAUAUACAAAAUCGGUAUAUAUAUAAUACAAAAAUUAGUUUUCAUAUAUCAAA--UCUCCAGCUGCUGUGGCUUAA----------------- -------------...............(((((((...((((......))))......)))))))...--.....((((.....))))...----------------- ( -6.50, z-score = 0.07, R) >consensus ______UUGAGUUAUAAUAAGUGCGACGUUCGCACAGAAAACACGAAAUUUUAAUUUCAAUUAACAAG__UGCCAAAGUAAAUUUUCUAAACUCAAAAAUAG______ ........((((((......(((((.....))))).........(((((....)))))..............................)))))).............. ( -2.79 = -3.20 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:18 2011