| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,457,551 – 22,457,650 |
| Length | 99 |
| Max. P | 0.650107 |
| Location | 22,457,551 – 22,457,650 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 85.38 |
| Shannon entropy | 0.28691 |
| G+C content | 0.52148 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -25.50 |
| Energy contribution | -25.37 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22457551 99 - 27905053 UGCUGUUAACUGAUUGCUGUUCUAGUUGGAGCUCCGGAGUCGGAAGUCAGAAUGAUGUCGAGCUGAGCCGCCGGGCCAUUUAUAUGGCCUGGCCGACAC .........((((((...(((((....)))))((((....)))))))))).....(((((.((...)).((((((((((....))))))))))))))). ( -38.50, z-score = -2.46, R) >droSim1.chr3R 22285518 99 - 27517382 UGCUGUUAACUGAUUGCUGUUCUAGUUGGAGCUCCGGAGUCGGAAGUCAGAAUGAUGUCGAGCUGAGCCGCCGGGCCAUUUAUAUGGCCUGGUCGACAC .........((((((...(((((....)))))((((....)))))))))).....((((((((...))..(((((((((....))))))))))))))). ( -36.30, z-score = -1.92, R) >droSec1.super_13 1232353 99 - 2104621 UGCUGUUAACUGAUUGCUGUUCUAGUUGGAACUCCGGAGUCGGAAGUCAGAAUGAUGUCGAGCUGAGCCGCCGGGCCAUUUAUAUGGCCUGGUCGACAC .........((((((...(((((....)))))((((....)))))))))).....((((((((...))..(((((((((....))))))))))))))). ( -36.30, z-score = -2.33, R) >droYak2.chr3R 4791431 96 + 28832112 UGCUGUUA---GAUUGCUGUUCUAGUUGGAGCUCCGGAGUCGGAAGUCAGAAUGAUGUCGAACUGAGCCGCCGUGCCAUUUAUAUGGCCUGGUCGACAC ......((---((.......))))(((((.((((.(...((((..(((.....))).)))).).)))))((((.(((((....))))).)))))))).. ( -26.80, z-score = 0.12, R) >droEre2.scaffold_4820 4873907 99 + 10470090 UGCAGUUAAGUAAUUGCUGUUCUAGCUGGAGCUCCGGAGUCGGAAGUCAGAAUGAUGUCGAGCUGAGCCGACGGGCCAUUUAUAUGGCCUGGUCGACAC .((((((....)))))).((((.((((.((..((((....)))).(((.....))).)).))))))))(((((((((((....))))))).)))).... ( -37.10, z-score = -2.37, R) >droAna3.scaffold_13340 6819651 86 + 23697760 ---------UACUUUGCUGUUCUAGUUGGAGCUCUGAGGCCAGAAGUCAGAAUGAUGUCGGAGUGAGACUUUGGGCCAUUUAUAUGCCAUGGCAC---- ---------.....(((((((((....))))).....((((.((((((....((....))......)))))).)))).............)))).---- ( -21.80, z-score = 0.41, R) >consensus UGCUGUUAACUGAUUGCUGUUCUAGUUGGAGCUCCGGAGUCGGAAGUCAGAAUGAUGUCGAGCUGAGCCGCCGGGCCAUUUAUAUGGCCUGGUCGACAC ..................((((.((((.((..((((....)))).(((.....))).)).))))))))(((((((((((....))))))))).)).... (-25.50 = -25.37 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:17 2011