| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,455,186 – 22,455,276 |
| Length | 90 |
| Max. P | 0.521428 |
| Location | 22,455,186 – 22,455,276 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 65.87 |
| Shannon entropy | 0.62217 |
| G+C content | 0.43315 |
| Mean single sequence MFE | -23.14 |
| Consensus MFE | -6.91 |
| Energy contribution | -6.39 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22455186 90 + 27905053 GAUACACAUGUG-AUACA----UGAGUAACAAGGCAUCCAUCUAAAUAGCCCCAAAUGAGGUUUACGAUGCUCUUGAUGCUCUGUCCGCGGCUUU---- ........((((-..(((----.(((((.(((((((((.........((((.(....).))))...))))).)))).)))))))).)))).....---- ( -22.60, z-score = -1.25, R) >droSim1.chr3R 22283134 91 + 27517382 GAUACACAUGCACAUACA----UGAGUAACAAGGCAUCCAUCUAAAUAGCCCCAAAUGGGGUUUACGAUACUCUUGAUGCUCUGUCCGCGGCUUU---- ..(((.((((......))----)).)))(((..(((((.........((((((....))))))............)))))..)))..........---- ( -23.10, z-score = -1.55, R) >droSec1.super_13 1229979 91 + 2104621 GAUACACAUGCACAUACA----UGAGUAACAAGGCAUCCAUCUAAAUAGCCCCAAAUGGGGUUUACGAUGCUCUUGAUGCUCUGUCCGCGGCUUU---- .........((....(((----.(((((.(((((((((.........((((((....))))))...))))).)))).)))))))).....))...---- ( -28.70, z-score = -2.88, R) >droYak2.chr3R 4788869 91 - 28832112 GAUACACAUGUACAUGCA----UGAGUAACAAAGCAUCCAUCUAAAUAGCCCCAAAUGGGGUUUACGAUGCUCUUGAUGCUCUGUCCGCGGCUUU---- ..(((.(((((....)))----)).)))(((.((((((((((.....((((((....))))))...)))).....)))))).)))..........---- ( -27.50, z-score = -2.58, R) >droEre2.scaffold_4820 4871460 95 - 10470090 GAUACACAUGUAGAUACAAACAUGAGUAACAAAGCAUCCGUCUAAAUAGCCCCAAAUGGGGUUUACGAUGCUCUUGAUGCUCUGUCCGCGGCUUU---- ..(((.(((((........))))).)))(((.((((((((((.....((((((....))))))...)))).....)))))).)))..........---- ( -26.80, z-score = -2.36, R) >droVir3.scaffold_12822 611627 81 - 4096053 -------------ACAAA-----UGUUUAUGAAAUAGGCAAGUGUAUCGCAUAGAUUUUAGUUUACGAUCUAUUGGCCAGUCAGCCAACAAGCUACUCA -------------(((..-----(((((((...)))))))..)))...((.((((((.........))))))(((((......)))))...))...... ( -15.00, z-score = -0.54, R) >droMoj3.scaffold_6540 17359333 80 - 34148556 -------------AGCUA-----GGUUAGUGAA-UAGACAAGUGUAUUGCACCAAUUUUAGUUUACGAGCCAUUAGCUAGUCCGUCAACAACCUGCUCA -------------(((.(-----((((..(((.-..(((..(((.....)))...............(((.....))).)))..)))..)))))))).. ( -18.30, z-score = -1.38, R) >consensus GAUACACAUGUA_AUACA____UGAGUAACAAAGCAUCCAUCUAAAUAGCCCCAAAUGGGGUUUACGAUGCUCUUGAUGCUCUGUCCGCGGCUUU____ .......................((((.(((.((((((.........((((........))))............)))))).))).....))))..... ( -6.91 = -6.39 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:16 2011