| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,397,481 – 22,397,575 |
| Length | 94 |
| Max. P | 0.623404 |
| Location | 22,397,481 – 22,397,575 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 93.86 |
| Shannon entropy | 0.10321 |
| G+C content | 0.47182 |
| Mean single sequence MFE | -28.46 |
| Consensus MFE | -22.36 |
| Energy contribution | -22.52 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22397481 94 + 27905053 UUUAUUUUACGG--GUGACGAAGGACAAAAACGAUGGCGUUACUUCGUUCGGGGCUCACCUCAUUGAGCUGCACGCGUGAUGUCAUCGUAAAAUGC ..((((((((.(--....).............(((((((((((..(((..(.((((((......)))))).)))).))))))))))))))))))). ( -33.30, z-score = -3.30, R) >droSim1.chr3R 22225429 94 + 27517382 UUUAUUUUACGG--GUGACGAAGGACAAAAACGAUGGCCUUACUUCGUUCGGGGCUCACCUCAUUGAGCUGCACGCGUGAUGUCAUCGUAAAAUGC ..((((((((.(--....).............((((((.((((..(((..(.((((((......)))))).)))).)))).)))))))))))))). ( -29.40, z-score = -2.19, R) >droSec1.super_13 1172627 94 + 2104621 UUUAUUUUACGG--GUGACGAAGGACAAAAACGAUGGCCUUACUUCGUUCGGGGCUCACCUCAUUGAGCUGCACGCGUGAUGUCAUCGUAAAAUGC ..((((((((.(--....).............((((((.((((..(((..(.((((((......)))))).)))).)))).)))))))))))))). ( -29.40, z-score = -2.19, R) >droYak2.chr3R 4728753 92 - 28832112 UUUAUUUUACGGAUGUGAUGAAGGACAAAAACGAUGGCCUUUCUG----CGGGGCUCACCUCAUUGAGCUGCACGCGUGAUGUCAUCGUAAAAUGC ..((((((((...(((........))).....((((((...((((----((.((((((......))))))...)))).)).)))))))))))))). ( -27.30, z-score = -1.75, R) >droEre2.scaffold_4820 4811764 90 - 10470090 UUUAUUUUACGG--GUGAUGAAGGACAAAAACGAUGGCCUUACUU----CGGGGCUCACCUCAUUCAGCUGCAUGCGUGAUGUCAUCGUAAAAUGC ..((((((((..--((........))......((((((.((((..----.((((....)))).....((.....)))))).)))))))))))))). ( -22.90, z-score = -0.85, R) >consensus UUUAUUUUACGG__GUGACGAAGGACAAAAACGAUGGCCUUACUUCGUUCGGGGCUCACCUCAUUGAGCUGCACGCGUGAUGUCAUCGUAAAAUGC ..(((((((((....((.(....).))....)((((((.((((.......(.((((((......)))))).)....)))).)))))))))))))). (-22.36 = -22.52 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:08 2011