| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,379,061 – 22,379,160 |
| Length | 99 |
| Max. P | 0.991830 |
| Location | 22,379,061 – 22,379,160 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.43646 |
| G+C content | 0.59608 |
| Mean single sequence MFE | -29.98 |
| Consensus MFE | -21.11 |
| Energy contribution | -21.37 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.50 |
| SVM RNA-class probability | 0.991830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22379061 99 + 27905053 GAGGCCACAGCCUCGCUUCUCCUUCCAUUGUGUGCGGGCCACACAACUCGAGCAUGUCCUGCCUGCAGGACACCAGCACACCAGCACACAUUUCCCCCC (((((....)))))..............((((((((((........)))..((.(((((((....)))))))...))......)))))))......... ( -34.00, z-score = -3.31, R) >droEre2.scaffold_4820 4798186 89 - 10470090 GAGGCCACAGCCUCGCUUCUCCUCCCAUUGUGUG--GCCCACACAACUCGAGCAUGUCCUGCCUGCAGGACACCGGCA--------CACAUUUCCCCCC (((((....)))))(((....(((...(((((((--...)))))))...)))..(((((((....)))))))..))).--------............. ( -30.80, z-score = -3.38, R) >droYak2.chr3R 4717207 94 - 28832112 GAGGCCACAGCCUCGCUACUCCUGCUAUUGUGUG--GCCCAUACAACUCGAGCAUGUCCUGCCUGCAGGACACCAGCAGC---ACACACAUUUCCCCCC (((((....)))))(((.((..((((.(((((((--...)))))))....))))(((((((....)))))))..)).)))---................ ( -31.60, z-score = -3.04, R) >droSec1.super_13 1161486 99 + 2104621 GAGGCCACAGCCUCUCUUCUCCUGCCAUUGUGUGUGGGCCACACAACUCGAGCAUGUCCUGCCUGCAGGACACCAGCACACCAGCACACAUUUCCCCCC (((((....)))))........(((....(((((((((((.........).)).(((((((....)))))))))).)))))..)))............. ( -31.00, z-score = -1.58, R) >droSim1.chr3R 22213576 99 + 27517382 GAGGCCACAGCCUCGCUUCUCCUGCCAUUGUGUGUGGGCCACACAACUCGAGCAUGUCCUGCCUGCAGGACACCAGCACACCAGCACACAUUUCCCCCC (((((....)))))(((.....(((..(((((((.....)))))))........(((((((....)))))))...)))....))).............. ( -32.00, z-score = -1.58, R) >droMoj3.scaffold_6540 17280385 76 - 34148556 GGGGCAACAACAAUGC--------CCAUUGUUU-----CAGUGCAACUCGAACAUGUCCUGCUCGAGAGUCGACAGUC------CAGCUAUUGCU---- .(((((.......)))--------))..(((((-----.((.....)).)))))((..(((.(((.....))))))..------))((....)).---- ( -20.50, z-score = -0.65, R) >consensus GAGGCCACAGCCUCGCUUCUCCUGCCAUUGUGUG__GGCCACACAACUCGAGCAUGUCCUGCCUGCAGGACACCAGCACA___GCACACAUUUCCCCCC (((((....))))).............(((((((.....))))))).....((.(((((((....)))))))...))...................... (-21.11 = -21.37 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:01 2011