| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,377,313 – 22,377,407 |
| Length | 94 |
| Max. P | 0.836092 |
| Location | 22,377,313 – 22,377,407 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.04 |
| Shannon entropy | 0.35268 |
| G+C content | 0.43373 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -14.86 |
| Energy contribution | -15.58 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.836092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22377313 94 + 27905053 ----UUUUUCUCCUCGUCGCUUUCUAGGGCUUGUGAAA-UAUGCAUCCUCGACAUCAUCUUCAUUAAGUGCAGUUCGCAUUUGAGGAAGAUGAUGUAUG ----......................(((..(((....-...)))..))).(((((((((((.((((((((.....)))))))).)))))))))))... ( -29.00, z-score = -3.10, R) >droSim1.chr3R 22211932 94 + 27517382 ----UUUUUCUCCUCGCUGCUUUCUAGGGCUUGUGAAA-UAUGCAUCCUCGACAUCAUCUUCAUUAAGUGCAGUUCGCAUUUGAGGAAGAUGAUGUAUG ----.........((((.((((....))))..))))..-............(((((((((((.((((((((.....)))))))).)))))))))))... ( -31.40, z-score = -3.68, R) >droSec1.super_13 1159909 94 + 2104621 ----UUUUUCUCCUCGCUGCUUUCUAGGGCUUGUGAAA-UAUGCAUCCUCGAUAUCAUCUUCAUUAAGUGCAGUUCGCAUUUGAGGAAGAUGAUGCAUG ----.........((((.((((....))))..))))..-((((((((...)))(((((((((.((((((((.....)))))))).)))))))))))))) ( -29.70, z-score = -2.85, R) >droYak2.chr3R 4715549 89 - 28832112 -----CCCUUUGCUCGUUCCCUUCGAGAGCUUGUGAAA-UAUGCAUCCUCGACAUCAUCUUCAUUAAGUGCUGCUCGCAUU----GAGGAAGAUGUAUG -----.................(((((.(..(((....-...))).))))))((((((((((....(((((.....)))))----...))))))).))) ( -21.70, z-score = -1.09, R) >droEre2.scaffold_4820 4796579 94 - 10470090 CCCUUUGCGUUGCUCGUUCCCUUCUAGAGCUUCUGAAA-UAUGCAUCCUCGACAUCAUCUUCAUUAAGUGCUGCUCGCAUU----GAGGAAGAUGUAUG .....(((((.((((...........))))........-.))))).......((((((((((....(((((.....)))))----...))))))).))) ( -22.70, z-score = -1.32, R) >droAna3.scaffold_13340 6739950 91 - 23697760 ----CCUUUGUGCUUUCCUCUUUCAUAAACUGGGGAAAAUAUGCAUCCUCGACAGUGUCUUCAUUAAGAGCAGCUCGCAUC----GAGGAAGAUGUAUG ----.........(((((((...........))))))).(((((((((((((.((((....))))....((.....)).))----)))))...)))))) ( -22.60, z-score = -0.88, R) >consensus ____UUUUUCUCCUCGCUGCUUUCUAGAGCUUGUGAAA_UAUGCAUCCUCGACAUCAUCUUCAUUAAGUGCAGCUCGCAUU____GAAGAAGAUGUAUG ..........................(((..(((........)))..))).(((((.(((((....(((((.....)))))....))))).)))))... (-14.86 = -15.58 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:00 2011