Locus 11602

Sequence ID dm3.chr3R
Location 22,375,088 – 22,375,192
Length 104
Max. P 0.500000
window15938

overview

Window 8

Location 22,375,088 – 22,375,192
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 87.08
Shannon entropy 0.23106
G+C content 0.50636
Mean single sequence MFE -31.42
Consensus MFE -22.64
Energy contribution -25.16
Covariance contribution 2.52
Combinations/Pair 1.06
Mean z-score -1.73
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr3R 22375088 104 + 27905053
GACCAUUAGAGUCCAUGACUUUGUAGGAUGGUCGCCAAACAGCGAUUGUUGUUGGCCCAAAGUCAAAGCGGGCCGCGAGCGACCGCCAAGUGAUGGGAACAUUU
..(((((((((((...)))))....((.((((((((.((((((....))))))(((((...........)))))..).)))))))))...))))))........ ( -38.80, z-score =  -2.89, R)
>droSim1.chr3R 22209662 104 + 27517382
GGCCAUUAGAGUCCAUGACUUUGUAGGAAGUUCGCCAAACAGCGAUUGUUGUUGGCCCAAAGUCAAAGCGGGCCGAUAGAGACCGCCAAGUGAUGGGAACAUUU
..((..(((((((...)))))))..))..((((.(((.((.(((.((.((((((((((...........)))))))))).)).)))...))..))))))).... ( -34.10, z-score =  -2.34, R)
>droSec1.super_13 1157604 104 + 2104621
GGCCAUUAGAGUCCAUGACUUCGUAGGAAGUUCGCCAAACAGCGAUUGUUGUUGGCCCAAAGUCAAAGCGGGCCGAUAGCGAACGCCAAGUGAUGGGAACAUUU
..((....(((((...)))))....))..((((.(((.((.(((.(((((((((((((...........))))))))))))).)))...))..))))))).... ( -37.00, z-score =  -2.89, R)
>droYak2.chr3R 4713251 86 - 28832112
GGCCAUUAGAGUCCAUGACUUUGUAGGAAGUUAGCCAAAUGGCGAUGGU---UGGCCCAAAG---------------AGCAACCGCCAAGUGAUGGGAACAUUU
(((((.....(((..(((((((....)))))))(((....))))))...---)))))....(---------------.((....)))....((((....)))). ( -22.50, z-score =  -0.37, R)
>droEre2.scaffold_4820 4794351 101 - 10470090
GGCCAUUAGAGUCCAUGACUUUGUAGGAAGUUCGCCAAACAGCGAUUGU---UGGCCCAAAGUCAAAGCGAGCCGAGAGCAACCGCCAAGUGAUGGGAACAUUU
........(..(((((.((((.((.((..((((((......)).....(---((((.(...........).)))))))))..)))).)))).)))))..).... ( -24.70, z-score =  -0.17, R)
>consensus
GGCCAUUAGAGUCCAUGACUUUGUAGGAAGUUCGCCAAACAGCGAUUGUUGUUGGCCCAAAGUCAAAGCGGGCCGAGAGCGACCGCCAAGUGAUGGGAACAUUU
..((..(((((((...)))))))..))..((((.(((.((.(((.(((((..((((((...........))))))..))))).)))...))..))))))).... (-22.64 = -25.16 +   2.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:59 2011