| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,367,848 – 22,367,933 |
| Length | 85 |
| Max. P | 0.559571 |
| Location | 22,367,848 – 22,367,933 |
|---|---|
| Length | 85 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 93.05 |
| Shannon entropy | 0.11435 |
| G+C content | 0.42335 |
| Mean single sequence MFE | -18.74 |
| Consensus MFE | -17.26 |
| Energy contribution | -17.26 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22367848 85 - 27905053 ------ACUGCAACAUCAACAGGGGAGUCGAAAAAUAUACAAAUAUGUGUAAUCGUCGAACAAACAAGACACGAGCUUGCGAGCUUCUCCA ------.(((.........))).((((((((....((((((....))))))....)))).............(((((....))))))))). ( -17.80, z-score = -1.11, R) >droEre2.scaffold_4820 4786957 91 + 10470090 ACUGCAACAGCAACAGCAACAGAGGAGUCGAAAAAUAUACAAAUAUGUGUAAUCGUCGAACAAACAAGACACGAGCUUGUGAGCUUCUCCA ..(((....))).........((((((((((....((((((....))))))....))))....(((((.(....))))))...)))))).. ( -19.50, z-score = -1.11, R) >droYak2.chr3R 4705668 91 + 28832112 ACUGCAACAGUAACAGCCACAGAGGAGUCGAAAAAUAUACAAAUAUGUGUAAUCGUCGAACAAACAAGACACGAGCUUGCGAGCUUCUCCA ((((...))))............((((((((....((((((....))))))....)))).............(((((....))))))))). ( -18.20, z-score = -0.81, R) >droSec1.super_13 1150437 85 - 2104621 ------ACUGCAACAGCAACAGAGGAGUCGAAAAAUAUACAAAUAUGUGUAAUCGUCGAACAAACAAGACACGAGCUUGCGAGCUUCUCCA ------..(((....))).....((((((((....((((((....))))))....)))).............(((((....))))))))). ( -19.10, z-score = -1.49, R) >droSim1.chr3R 22202426 85 - 27517382 ------ACUGCAACAGCAACAGAGGAGUCGAAAAAUAUACAAAUAUGUGUAAUCGUCGAACAAACAAGACACGAGCUUGCGAGCUUCUCCA ------..(((....))).....((((((((....((((((....))))))....)))).............(((((....))))))))). ( -19.10, z-score = -1.49, R) >consensus ______ACUGCAACAGCAACAGAGGAGUCGAAAAAUAUACAAAUAUGUGUAAUCGUCGAACAAACAAGACACGAGCUUGCGAGCUUCUCCA .......................((((((((....((((((....))))))....)))).............(((((....))))))))). (-17.26 = -17.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:59 2011