Locus 1160

Sequence ID dm3.chr2L
Location 8,733,900 – 8,733,992
Length 92
Max. P 0.994357
window1589 window1590

overview

Window 9

Location 8,733,900 – 8,733,992
Length 92
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 68.51
Shannon entropy 0.52855
G+C content 0.36751
Mean single sequence MFE -23.10
Consensus MFE -14.13
Energy contribution -14.23
Covariance contribution 0.10
Combinations/Pair 1.32
Mean z-score -2.14
Structure conservation index 0.61
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.69
SVM RNA-class probability 0.994357
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 8733900 92 + 23011544
---------------CAUAUCUUGAUUAAUGAACGGUGCGUUUCGUCACUGCGUGAAAUGCCUUCGAAGGAUGUUGAACCGUUCUAAAGUCAUGAUUAUUUUAACAU----------
---------------...(((.(((((...(((((((((((((((........))))))))..((....))......)))))))...))))).)))...........---------- ( -24.60, z-score =  -2.34, R)
>droSim1.chr2L 8510829 92 + 22036055
---------------CAUAUCUUGAUUAAUGAACGGUGCGUUUCGUCACUACGUUAAAUGCCUUGGAAGGAUGUUCAACCGUUCUAAAAUCAUGAUUAUUUUAACAU----------
---------------...(((.(((((...((((((((((((((((....)))..))))))..((((......)))))))))))...))))).)))...........---------- ( -20.80, z-score =  -1.94, R)
>droSec1.super_3 4207308 92 + 7220098
---------------CAUAUCUUGAUUAAUGAACGGUGCGUUUCGUCACUACGUUAAAUGCCUUGCGAGGAUGAUAAACCGUUCUAAAAUCAUGAUUAUUUUAACAU----------
---------------...(((.(((((...(((((((.....(((((.((.(((..........))))))))))...)))))))...))))).)))...........---------- ( -24.20, z-score =  -3.27, R)
>droYak2.chr2L 11375360 101 + 22324452
---------------CAUAUCGUGGUUAAUGAACGGUGCGUUUCGUCACUACGUGAAAUGCCUUGGGAGGAUAUUGAACCGUUCUAAAACCACGAUGAUGAUGAUG-AUGCUAGCAU
---------------((((((((((((...(((((((((((((((........))))))))((....))........)))))))...))))))))).)))......-.......... ( -31.70, z-score =  -2.85, R)
>droEre2.scaffold_4929 9319667 95 + 26641161
---------------CAUAUCUUGAUUGCUGAACGGUGCGUUUCGUCACUACGUGAA-UGCCUUGGGAGGAUAUUGAACCGUUCUAAAAUCAAGAUCAUGUUAGCAUAUGU------
---------------((((((((((((...(((((((.((..((.((.(((.((...-.))..))))).))...)).)))))))...))))))))).)))...........------ ( -27.80, z-score =  -2.35, R)
>droAna3.scaffold_12916 10373283 99 + 16180835
CAUUUACCGAAGCCCCCAAAUGAGAUUAUUGAAC--UUUAAUUUCCCUUUAUUUUUAGUGACUUUCAAGGCUAAUUA--UAUUUUAAAAACGAAUUGA----AACAU----------
..........((((......(((((((((((((.--..(((.......)))..)))))))).))))).)))).....--...................----.....---------- (  -9.50, z-score =  -0.08, R)
>consensus
_______________CAUAUCUUGAUUAAUGAACGGUGCGUUUCGUCACUACGUGAAAUGCCUUGGAAGGAUAUUGAACCGUUCUAAAAUCAUGAUUAUUUUAACAU__________
..................(((.(((((...(((((((((((.........))))......(((....))).......)))))))...))))).)))..................... (-14.13 = -14.23 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 8,733,900 – 8,733,992
Length 92
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 68.51
Shannon entropy 0.52855
G+C content 0.36751
Mean single sequence MFE -18.98
Consensus MFE -12.25
Energy contribution -11.88
Covariance contribution -0.37
Combinations/Pair 1.36
Mean z-score -1.53
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.86
SVM RNA-class probability 0.972039
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 8733900 92 - 23011544
----------AUGUUAAAAUAAUCAUGACUUUAGAACGGUUCAACAUCCUUCGAAGGCAUUUCACGCAGUGACGAAACGCACCGUUCAUUAAUCAAGAUAUG---------------
----------...........(((.(((.....(((((((.(.....(((....)))....((((...))))......).))))))).....))).)))...--------------- ( -15.70, z-score =  -0.46, R)
>droSim1.chr2L 8510829 92 - 22036055
----------AUGUUAAAAUAAUCAUGAUUUUAGAACGGUUGAACAUCCUUCCAAGGCAUUUAACGUAGUGACGAAACGCACCGUUCAUUAAUCAAGAUAUG---------------
----------...........(((.(((((...(((((((((((...(((....)))..))))))...(((.((...))))))))))...))))).)))...--------------- ( -19.00, z-score =  -1.80, R)
>droSec1.super_3 4207308 92 - 7220098
----------AUGUUAAAAUAAUCAUGAUUUUAGAACGGUUUAUCAUCCUCGCAAGGCAUUUAACGUAGUGACGAAACGCACCGUUCAUUAAUCAAGAUAUG---------------
----------...........(((.(((((...(((((((......((.((((...((.......)).)))).)).....)))))))...))))).)))...--------------- ( -19.70, z-score =  -2.04, R)
>droYak2.chr2L 11375360 101 - 22324452
AUGCUAGCAU-CAUCAUCAUCAUCGUGGUUUUAGAACGGUUCAAUAUCCUCCCAAGGCAUUUCACGUAGUGACGAAACGCACCGUUCAUUAACCACGAUAUG---------------
..........-......(((.(((((((((...(((((((.(.....(((....)))....((((...))))......).)))))))...))))))))))))--------------- ( -26.80, z-score =  -3.38, R)
>droEre2.scaffold_4929 9319667 95 - 26641161
------ACAUAUGCUAACAUGAUCUUGAUUUUAGAACGGUUCAAUAUCCUCCCAAGGCA-UUCACGUAGUGACGAAACGCACCGUUCAGCAAUCAAGAUAUG---------------
------...........((((.((((((((...(((((((.(.....(((....)))..-.((((...))))......).)))))))...))))))))))))--------------- ( -22.90, z-score =  -2.54, R)
>droAna3.scaffold_12916 10373283 99 - 16180835
----------AUGUU----UCAAUUCGUUUUUAAAAUA--UAAUUAGCCUUGAAAGUCACUAAAAAUAAAGGGAAAUUAAA--GUUCAAUAAUCUCAUUUGGGGGCUUCGGUAAAUG
----------.....----.................((--(....((((((.(((....((........)).((.((((..--......)))).)).))).))))))...))).... (  -9.80, z-score =   1.07, R)
>consensus
__________AUGUUAAAAUAAUCAUGAUUUUAGAACGGUUCAACAUCCUCCCAAGGCAUUUAACGUAGUGACGAAACGCACCGUUCAUUAAUCAAGAUAUG_______________
.....................(((.(((((...(((((((.......(((....)))........((.((......)))))))))))...))))).))).................. (-12.25 = -11.88 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:47 2011