| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,364,271 – 22,364,390 |
| Length | 119 |
| Max. P | 0.750116 |
| Location | 22,364,271 – 22,364,390 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 91.72 |
| Shannon entropy | 0.14017 |
| G+C content | 0.41988 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -25.04 |
| Energy contribution | -25.12 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22364271 119 + 27905053 AUAAAUGCCAAUGGACCAAUAGGUUGAACAUUCCGAUAGGAUUGUUUGAUCUGCUCAAACCACUCACUUUUAUCUGUUUAACAACUUUGAACAACGGCCUUGUCUAGCGGCGAUGACGA .....((((..(((((...(((((..((((.(((....))).))))..))))).....................(((((((.....)))))))........)))))..))))....... ( -30.40, z-score = -2.31, R) >droEre2.scaffold_4820 4783414 111 - 10470090 AUAAAUGCCAAUAGACCAAUAGGUUGAACAUUCCGAUAGGACUGUUUGAUCUGCUCAAACCCCUCGCUUUUAUCUGUUUAACAACUUUGAACAACGGCCUUGUCUGGCGGU-------- .....(((((..((.((..(((((..((((.(((....))).))))..))))).....................(((((((.....)))))))..)).))....)))))..-------- ( -27.90, z-score = -2.06, R) >droYak2.chr3R 4702130 119 - 28832112 AUAAAUGCCAAUAGACCAAUAGGUUGAGCAUUCCGAUAGGAUUGUUUGAUCUGCUCAAACCCCUCGCUCUUAUCUGGUUAACAACUUUGAACAACGGCCUUGUCUGGCAGCGAUGACGA .....(((((...(((((..((((..((((.(((....))).))))..))))((...........)).......))))).((((..(((.....)))..)))).))))).......... ( -26.80, z-score = -0.19, R) >droSec1.super_13 1146962 113 + 2104621 AUAAAUGCCAAUGGACCAAUAGGUUGAACAUUCCGAUAGUAUUGUUUGAUCUGCUCAAACCACUCACUUUUAUCUGUUUAACAACUUUGAACAACGGCCUUGUCUGGCGGCGA------ .....((((..(((((....((((((........(((((....((((((.....)))))).........)))))(((((((.....))))))).)))))).)))))..)))).------ ( -25.72, z-score = -1.15, R) >droSim1.chr3R 22198898 119 + 27517382 AUAAAUGCCAAUGUACCAAUAGGUUGAACAUUCCGAUAGGAUUGUUUGAUCUGCUCAAACCACUCACUUUUAUCUGUUUAACAACUUUGAACAACGGCCUUGUCUGGCGGCGAUGACGA .....((((..(((.....(((((..((((.(((....))).))))..))))).....................(((((((.....))))))))))(((......)))))))....... ( -30.10, z-score = -2.10, R) >consensus AUAAAUGCCAAUGGACCAAUAGGUUGAACAUUCCGAUAGGAUUGUUUGAUCUGCUCAAACCACUCACUUUUAUCUGUUUAACAACUUUGAACAACGGCCUUGUCUGGCGGCGAUGACGA ......(((..(((((...(((((..((((.(((....))).))))..))))).....................(((((((.....)))))))........)))))..)))........ (-25.04 = -25.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:56 2011