Locus 11598

Sequence ID dm3.chr3R
Location 22,355,913 – 22,355,972
Length 59
Max. P 0.855226
window15933

overview

Window 3

Location 22,355,913 – 22,355,972
Length 59
Sequences 5
Columns 59
Reading direction forward
Mean pairwise identity 98.64
Shannon entropy 0.02447
G+C content 0.44068
Mean single sequence MFE -11.70
Consensus MFE -11.56
Energy contribution -11.56
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.93
SVM RNA-class probability 0.855226
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 22355913 59 + 27905053
AACAAGGAAAAGUUAUGUAGUGUUCUGCGCCAUGUUCCUUCGGAUACCUUCCUCCAUAG
...((((((......(((((....))))).....)))))).(((.....)))....... ( -11.70, z-score =  -1.42, R)
>droSim1.chr3R 22185622 59 + 27517382
AACAAGGAAAAGUUAUGUAGUGUUCUGCGCCAUGUUCCUUCGGAUACCUUCCUCCAUAG
...((((((......(((((....))))).....)))))).(((.....)))....... ( -11.70, z-score =  -1.42, R)
>droSec1.super_13 1138597 59 + 2104621
AACAAGGAAAAGUUAUGUAGUGUUCUGCGCCAUGUUCCUUUGGAUACCUUCCUCCAUAG
.....(((((((..((((.(((.....))).))))..))))(((.....)))))).... ( -12.10, z-score =  -1.48, R)
>droYak2.chr3R 4693171 59 - 28832112
AACAAGGAAAAGUUAUGUAGUGUUCUGCGCCAUGUUCCUUCGGAUACCUUCCUCCAUAG
...((((((......(((((....))))).....)))))).(((.....)))....... ( -11.70, z-score =  -1.42, R)
>droEre2.scaffold_4820 4774457 59 - 10470090
AACAAGGAAAAGUUAUGUAGUGUUCUGCGCCAUGUUCCUUCGGAUACCUUCCCCCAUAG
...((((((......(((((....))))).....)))))).(((.....)))....... ( -11.30, z-score =  -1.38, R)
>consensus
AACAAGGAAAAGUUAUGUAGUGUUCUGCGCCAUGUUCCUUCGGAUACCUUCCUCCAUAG
...((((((......(((((....))))).....)))))).(((.....)))....... (-11.56 = -11.56 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:55 2011