| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,354,093 – 22,354,204 |
| Length | 111 |
| Max. P | 0.862731 |
| Location | 22,354,093 – 22,354,204 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 68.39 |
| Shannon entropy | 0.59529 |
| G+C content | 0.35872 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -12.41 |
| Energy contribution | -11.59 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 1.61 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22354093 111 + 27905053 ACAUAAUAUAAAUCAUACUA-GUAUCUUUUCCUUU-----UUUGUGGCAUUUAUUUGGCAUUACUACGCUUUUCUGGUAGUGUAGGACUUUGU-GCUUGUUUUGGUGCCGCUUUUCGG ....................-..............-----...((((((((.....(((((..(((((((........)))))))......))-)))......))))))))....... ( -25.30, z-score = -2.11, R) >droAna3.scaffold_13340 1392617 107 - 23697760 ---------AAUCCUUCAAGGACACCCUUCUAUAUUGUCCUUAUUUGUAUUUAUAAAAACUGAUGAUGUAUUUUGAAGUGUAACAACCUUUGUAGCUUGUUUGGAUGGCGAUUUUC-- ---------.((((..((((...((.(((((((((..((....(((((....)))))....))..)))))....)))).)).(((.....)))..))))...))))..........-- ( -17.20, z-score = -0.15, R) >droSim1.chr3R 22183893 111 + 27517382 ACAUAAUAUAAAUCAUACUA-UUAUCUUUUCCUUU-----UUUGUGGCAUUUAUUUUGCAUUACUACGCUUUUCUGGUAGUGUAGGACUUUGU-GCUUGUUUUGGUGCCGCUUUUCGG ....................-..............-----...((((((((......((((..(((((((........)))))))......))-)).......))))))))....... ( -23.72, z-score = -2.46, R) >droSec1.super_13 1136844 111 + 2104621 ACAUAAUAUAAAUCAUACUC-GUAUCUUUUCCUUU-----UUUGUGGAAUUUAUUUGGCAUUACUACGCUUUUCUGGUAGUGUAGGACUUUGU-GCUUGUUUUGGUGCCGCUUUUCGG ....................-.......((((...-----.....)))).......((((((((((((((........)))))))(((.....-....))).)))))))......... ( -20.00, z-score = -0.59, R) >droYak2.chr3R 4691325 117 - 28832112 GCAUUAUACAAAUCGUACUUAGUAACUUGCUCUAUCGUUUUUUGUGUCAUUUAGUUGGCAUUACUACACUUUUCUGGUAGUGUAGGAUUUUGU-ACUUGUGUCGGUGGCGCUUUUCGG .((((((((((...((((..(((....................((((((......))))))..(((((((........))))))).)))..))-)))))))).))))........... ( -24.10, z-score = -0.55, R) >droEre2.scaffold_4820 4772688 98 - 10470090 --------------AUAUUAUGUAAAUCAUACUGU-----UUUGUGGCAUUUAGUUGGCCAUAAUACAUUUUUCUGAUAGUGUAGGACUUUGU-GCUUGUGUCGGUGGCGCUUUUCGG --------------....((((.....)))).(((-----.(((((((.........))))))).))).....((((.(((((..(((.....-......)))....)))))..)))) ( -19.90, z-score = 0.01, R) >consensus ACAUAAUAUAAAUCAUACUA_GUAUCUUUUCCUUU_____UUUGUGGCAUUUAUUUGGCAUUACUACGCUUUUCUGGUAGUGUAGGACUUUGU_GCUUGUUUUGGUGCCGCUUUUCGG ...........................................((((((((......(((...(((((((........))))))).....)))..........))))))))....... (-12.41 = -11.59 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:55 2011