| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,353,960 – 22,354,060 |
| Length | 100 |
| Max. P | 0.979620 |
| Location | 22,353,960 – 22,354,060 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.32 |
| Shannon entropy | 0.41813 |
| G+C content | 0.33321 |
| Mean single sequence MFE | -22.94 |
| Consensus MFE | -15.60 |
| Energy contribution | -15.44 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22353960 100 + 27905053 AUAGGUUGAUAUCUUCAACUCAAGGUAUCUACACAAAUAC------------GCUCCUAGAAGGGGA-AAUUGCUUAACUAUUGUAACUAAAAGUUAGUUACAUCCGUGUAUC------- ....((.((((((((......)))))))).))....((((------------((((((.....))))-..............((((((((.....))))))))...)))))).------- ( -23.80, z-score = -2.41, R) >droSim1.chr3R 22183757 100 + 27517382 UUAGGUAGAUAUCUUCAACUCUAGGUAUCCACAGAAAAAC------------GUUUCUAGAAAAGGA-AAUUGCUUAACUAUUGUAACUAAAAGUUAGUUACAUCAGUGUAUU------- .(((((((((((((........)))))))...........------------((((((......)))-)))))))))(((..((((((((.....))))))))..))).....------- ( -22.50, z-score = -2.48, R) >droSec1.super_13 1136704 100 + 2104621 UUAGGUAGAUAUCUUCAACUCAAGGUAUCUACAGAAAAAC------------GUUGCUAGAAAGGCA-AAUUGCUCAACUAUUGUAACUAAAAGUUAGUUACAUCCGUGUAUC------- ....(((((((((((......)))))))))))......((------------((((((.....))))-).............((((((((.....))))))))..))).....------- ( -25.10, z-score = -3.43, R) >droYak2.chr3R 4691173 119 - 28832112 UAAGGUAGAUAUCUUCAACUCAAGGCAUUUACAGGGAAACUUGUUUCCACGUGUUUCUAGAAAAGGA-AAAUGCGUAUCUACAGUAACUAAACGUUAGUUCCAUCCGUAUGUAAUGCGUU ....((((((.............((.....(((((....)))))..))((((((((((......)).-)))))))))))))).(.(((((.....))))).)...(((((...))))).. ( -24.90, z-score = -1.02, R) >droEre2.scaffold_4820 4772544 111 - 10470090 UAACGUAGAUAUCUUCAACUCAAAAUAUUUACAGGCAAACUUGUUUUAAC--GUUUCUAGAAAAGAAGAAAAACGCAUCUGUAGUAACUAAAACUUGGUUACAACGGUAUAUC------- ....((((((((.((......)).))))))))..........(((((...--.(((((.....))))).)))))....((((.(((((((.....))))))).))))......------- ( -18.40, z-score = -1.15, R) >consensus UUAGGUAGAUAUCUUCAACUCAAGGUAUCUACAGAAAAAC____________GUUUCUAGAAAAGGA_AAUUGCUUAACUAUUGUAACUAAAAGUUAGUUACAUCCGUGUAUC_______ ....(((((((((((......)))))))))))......................((((.....))))................(((((((.....))))))).................. (-15.60 = -15.44 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:54 2011