| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,338,145 – 22,338,244 |
| Length | 99 |
| Max. P | 0.511567 |
| Location | 22,338,145 – 22,338,244 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 57.26 |
| Shannon entropy | 0.72183 |
| G+C content | 0.35364 |
| Mean single sequence MFE | -21.34 |
| Consensus MFE | -8.21 |
| Energy contribution | -8.28 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22338145 99 - 27905053 ACUGAGAUCCUCUCUCACAUGUAUGAGCUCUGUAAAGAGUUCAUUAAAAAGAUCCCAUUCUUUGGAAUCACCAAAGAAGGUGGGAAUCUGUAUUUUAGG .(((((((.(............(((((((((....))))))))).....((((((((((((((((.....)))))))..))))).))))).))))))). ( -33.80, z-score = -3.87, R) >droSim1.chr2h_random 2385180 95 + 3178526 ---UCUCUAUCAUCUUGUAUGAUUUAUUU-UUUAAAUAAUUCAGAGAAAAAGUCCAACUCUUUUUCUUCUUCAGUAAAGGUGGGAACUUGUAUUUUUGG ---......(((((((...(((.(((((.-....))))).)))(((((((((.......)))))))))........)))))))................ ( -15.80, z-score = -0.58, R) >droSec1.super_80 90822 96 + 135508 --UUAGUCAUC-UCUUGCAUGAAAUAUUUCUUUAAAUAAUUCAAAGAAUAAGUCCCACUAUUUGACUUCUCCAGUAAAGGUAGGAACUUGUAUUUUUGG --....(((((-....).))))...................((((((((((((((.(((.....(((.....)))...))).)).)))))).)))))). ( -13.30, z-score = 0.35, R) >triCas2.singleUn_1817 7002 99 - 22356 UGGGAGCGUGAGAUUUGAGUGAAUGAGCGAAUUGAACAUGUCUCUGAAUGCUAACCAUUUUUCGUAUGCACCGUCGAAAGUGGGCAAGUCAAUUUUGGG (.((((((((.((((((..(....)..))))))...)))).)))).).......(((.........(((.(((.(....))))))).........))). ( -22.47, z-score = 0.42, R) >consensus __UGAGCUAUC_UCUUGCAUGAAUGAGCUCUUUAAAUAAUUCAAAGAAAAAGUCCCACUCUUUGUAUUCACCAGUAAAGGUGGGAACUUGUAUUUUUGG .........................................((((((..(((((((((.(((((..........)))))))))).))))...)))))). ( -8.21 = -8.28 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:53 2011