Locus 11593

Sequence ID dm3.chr3R
Location 22,325,180 – 22,325,275
Length 95
Max. P 0.985161
window15926 window15927

overview

Window 6

Location 22,325,180 – 22,325,275
Length 95
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 85.99
Shannon entropy 0.26391
G+C content 0.44642
Mean single sequence MFE -28.88
Consensus MFE -22.00
Energy contribution -23.12
Covariance contribution 1.11
Combinations/Pair 1.14
Mean z-score -1.80
Structure conservation index 0.76
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.72
SVM RNA-class probability 0.798186
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 22325180 95 + 27905053
UUUCCCUCAGUGUACGUAUGUACGCACGGGUGUGUGUAUUGAGUGUAUUGGUGCGUACCUCUGGAAUCCUUAUGAAUCCUUU-GCAUAUACACACA---------
...(((...((((((....))))))..)))(((((((((...(((((..((..((((.....((...)).))))...))..)-)))))))))))))--------- ( -28.30, z-score =  -1.39, R)
>droSim1.chr3R 22163903 96 + 27517382
UUUCCCUCAGUGUACGCAUGUACGCACGGGUGUGUGUAUUGAGUGUAUUGGUGCGUACCUCUGGAAUCCUUAUGAAUCCUUUUGCAUACACACACA---------
.........(((((.(((.((((((((.((((..(.......)..)))).))))))))....(((.((.....)).)))...))).))))).....--------- ( -30.10, z-score =  -1.70, R)
>droSec1.super_13 1117043 96 + 2104621
UUUCCCUCAGUGUACGUAUGUACGCACGGGUGUGUGUAUUGAGUGUAUUGGUGCGUACCUCUGGAAUCCUUAUGAAUCCUUUUGCAUACACACACA---------
....((...((((((....))))))..))((((((((((.(((.((((......))))))).(((.((.....)).)))......)))))))))).--------- ( -29.80, z-score =  -1.75, R)
>droYak2.chr3R 4670628 96 - 28832112
UUUCUCUCAAUGUAUGGAUGUAUGCACGGGUGUGUGUAUCGAGUGUAUUGGUGCGUACCUCUGGAAUCCUUAUGAAUCCUUUUGCAUACACACACA---------
..............((..((((((((.(((.(((((((((((.....)))))))))))))).(((.((.....)).)))...))))))))..))..--------- ( -27.70, z-score =  -1.40, R)
>droEre2.scaffold_4820 4751888 96 - 10470090
UUUCCCUCAGUGUGCGAGUGUACGCACGGGUGUGUGUAUCGAGUGUAUUGGUGCGUACCUCUGGAAUCCUUAUGAAUCCUUUUGCAUACACACACA---------
.........(((((((((.((((((((.((((..(.......)..)))).))))))))))).(((.((.....)).)))....)))))).......--------- ( -34.10, z-score =  -2.62, R)
>droAna3.scaffold_13340 1371390 92 - 23697760
UUUUCCUUAGUGU-------------CUUGAGUGUGUAUCAAGUGUAUUGGUGCGUACCCCUGGAAUCCUUAUGAAUCCUUUCGCACACACACACACACACAUUU
.........((((-------------..((.((((((..(((.....)))(((((.......(((.((.....)).)))...))))))))))).)).)))).... ( -23.30, z-score =  -1.95, R)
>consensus
UUUCCCUCAGUGUACGUAUGUACGCACGGGUGUGUGUAUCGAGUGUAUUGGUGCGUACCUCUGGAAUCCUUAUGAAUCCUUUUGCAUACACACACA_________
.........((((((....))))))....((((((((((.(((.((((......))))))).(((.((.....)).)))......)))))))))).......... (-22.00 = -23.12 +   1.11)

alignment

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secondary structure

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dotplot

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Window 7

Location 22,325,180 – 22,325,275
Length 95
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 85.99
Shannon entropy 0.26391
G+C content 0.44642
Mean single sequence MFE -28.53
Consensus MFE -24.58
Energy contribution -25.02
Covariance contribution 0.43
Combinations/Pair 1.15
Mean z-score -2.35
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.19
SVM RNA-class probability 0.985161
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 22325180 95 - 27905053
---------UGUGUGUAUAUGC-AAAGGAUUCAUAAGGAUUCCAGAGGUACGCACCAAUACACUCAAUACACACACCCGUGCGUACAUACGUACACUGAGGGAAA
---------(((((((((....-...(((.((.....)).))).((((((........))).))).)))))))))(((..(.((((....)))).)...)))... ( -29.40, z-score =  -3.02, R)
>droSim1.chr3R 22163903 96 - 27517382
---------UGUGUGUGUAUGCAAAAGGAUUCAUAAGGAUUCCAGAGGUACGCACCAAUACACUCAAUACACACACCCGUGCGUACAUGCGUACACUGAGGGAAA
---------.((((((((((......(((.((.....)).))).((((((........))).))).))))))))))..((((((....))))))........... ( -30.20, z-score =  -2.31, R)
>droSec1.super_13 1117043 96 - 2104621
---------UGUGUGUGUAUGCAAAAGGAUUCAUAAGGAUUCCAGAGGUACGCACCAAUACACUCAAUACACACACCCGUGCGUACAUACGUACACUGAGGGAAA
---------.((((((((((......(((.((.....)).))).((((((........))).))).))))))))))..((((((....))))))........... ( -29.90, z-score =  -2.60, R)
>droYak2.chr3R 4670628 96 + 28832112
---------UGUGUGUGUAUGCAAAAGGAUUCAUAAGGAUUCCAGAGGUACGCACCAAUACACUCGAUACACACACCCGUGCAUACAUCCAUACAUUGAGAGAAA
---------((((((((((((((...(((.((.....)).))).((((((........))).)))..............))))))))..)))))).......... ( -24.30, z-score =  -1.91, R)
>droEre2.scaffold_4820 4751888 96 + 10470090
---------UGUGUGUGUAUGCAAAAGGAUUCAUAAGGAUUCCAGAGGUACGCACCAAUACACUCGAUACACACACCCGUGCGUACACUCGCACACUGAGGGAAA
---------.((((((((((.(....(((.((.....)).))).((((((........))).))))))))))))))..(((((......)))))........... ( -31.00, z-score =  -2.61, R)
>droAna3.scaffold_13340 1371390 92 + 23697760
AAAUGUGUGUGUGUGUGUGUGCGAAAGGAUUCAUAAGGAUUCCAGGGGUACGCACCAAUACACUUGAUACACACUCAAG-------------ACACUAAGGAAAA
...((.((((((((((((((((....(((.((.....)).)))....))))))))(((.....))))))))))).))..-------------............. ( -26.40, z-score =  -1.68, R)
>consensus
_________UGUGUGUGUAUGCAAAAGGAUUCAUAAGGAUUCCAGAGGUACGCACCAAUACACUCAAUACACACACCCGUGCGUACAUACGUACACUGAGGGAAA
..........((((((((((......(((.((.....)).))).((((((........))).))).))))))))))..(((((......)))))........... (-24.58 = -25.02 +   0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:50 2011