| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,321,031 – 22,321,158 |
| Length | 127 |
| Max. P | 0.827344 |
| Location | 22,321,031 – 22,321,158 |
|---|---|
| Length | 127 |
| Sequences | 10 |
| Columns | 134 |
| Reading direction | reverse |
| Mean pairwise identity | 90.99 |
| Shannon entropy | 0.18880 |
| G+C content | 0.27507 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -15.42 |
| Energy contribution | -15.44 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827344 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 22321031 127 - 27905053 UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC----CGCCAACUAAAUGAAAUGUUAUUUGCAUAAAAUUUUC--CAUUUCGCUUUCCUUUCU- ......(((.((((((((((((((((...((.....((((((((.................))))))))...----))..)))))))))))).)))).)))............--..................- ( -16.53, z-score = -1.87, R) >droSim1.chr3R 22159701 127 - 27517382 UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC----CGCCAACUAAAUGAAAUGUUAUUUGCAUAAAAUUUUC--CAUUUCGCUUUCCUUGCU- ......(((.((((((((((((((((...((.....((((((((.................))))))))...----))..)))))))))))).)))).)))............--......((.......)).- ( -17.53, z-score = -1.52, R) >droSec1.super_13 1112858 127 - 2104621 UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAACAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC----CGCCAACUAAAUGAAAUGUUAUUUGCAUAAAAUUUUC--CAUUUCGCUUUCCUUGCU- ......(((.((((((((((((((((...((......(((((((.................)))))))....----))..)))))))))))).)))).)))............--......((.......)).- ( -16.03, z-score = -1.00, R) >droYak2.chr3R 4666356 127 + 28832112 UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC----CGCCAACUAAAUGAAAUGUUAUUUGCAUAAAAUUUUC--CAUUUCGCUUUCCUUUCU- ......(((.((((((((((((((((...((.....((((((((.................))))))))...----))..)))))))))))).)))).)))............--..................- ( -16.53, z-score = -1.87, R) >droEre2.scaffold_4820 4747603 127 + 10470090 UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCAUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC----CGCCAACUAAAUGAAAUGUUAUUUGCAUAAAAUUUUC--CAUUUCGCUUUCCUUUCU- ......(((.((((((((((((((((..........((((((((.................))))))))...----....)))))))))))).)))).)))............--..................- ( -15.16, z-score = -1.58, R) >droAna3.scaffold_13340 1365811 128 + 23697760 UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC---UCGCCAACUAAAUGAAAUGUUAUUUGCAUAAAAUUUUC--CAUUUCGCCUUUCUUUCU- ......(((.((((((((((((((((...((.....((((((((.................))))))))...---.))..)))))))))))).)))).)))............--..................- ( -17.63, z-score = -2.28, R) >droPer1.super_0 1702154 132 - 11822988 UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCCGGCUCGCCGGCUAAAUGAAAUGUUAUUUGCAUAAAAAUUUC--CAUUUCAGUUUUUGUUCUU ......(((.((((((((((((((............((((((((.................)))))))).((((....)))))))))))))).)))).))).(((((((((..--......))))))))).... ( -23.43, z-score = -1.80, R) >dp4.Unknown_group_432 4132 132 - 10412 UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCCGGCUCGCCGGCUAAAUGAAAUGUUAUUUGCAUAAAAAUUUC--CAUUUCAGUUUUUGUUCUU ......(((.((((((((((((((............((((((((.................)))))))).((((....)))))))))))))).)))).))).(((((((((..--......))))))))).... ( -23.43, z-score = -1.80, R) >droVir3.scaffold_13047 15349831 129 - 19223366 UUAAUUCAAUUAAUUUUUAUUUAG-UUUUCGUUUAAUAUUUGCUCGCACUGCACAUUUUUAAGCAAAUAUCC---CAGCCAACUAAAUGAAAUGUUAUUUGCAUAAAAAUUUCAGCAAUUCCUUUUUUUUCCU- ......(((.((((((((((((((-((...(((..(((((((((.................)))))))))..---.))).)))))))))))).)))).)))................................- ( -18.23, z-score = -1.88, R) >droGri2.scaffold_14830 1627171 127 + 6267026 UUAAUUCAAUUAAUUUUUAUUUAGUUUUU-GUUUAAUAUUUGCUCGCUCUGCACAAUUUUGAGCAAAUAUAC---CAGCCCACUAAAUGAAAUGUUAUUUGCAUAAAAAUUCCAACAUCUUUUUUUCUUCU--- ......(((.(((((((((((((((....-(((..(((((((((((.............)))))))))))..---.)))..))))))))))).)))).)))..............................--- ( -21.12, z-score = -2.86, R) >consensus UUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC____CGCCAACUAAAUGAAAUGUUAUUUGCAUAAAAUUUUC__CAUUUCGCUUUCCUUUCU_ ......(((.((((((((((((((((..........((((((((.................))))))))...........)))))))))))).)))).)))................................. (-15.42 = -15.44 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:49 2011