| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,307,578 – 22,307,676 |
| Length | 98 |
| Max. P | 0.531189 |
| Location | 22,307,578 – 22,307,676 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.16 |
| Shannon entropy | 0.40624 |
| G+C content | 0.47329 |
| Mean single sequence MFE | -31.99 |
| Consensus MFE | -22.49 |
| Energy contribution | -23.47 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22307578 98 - 27905053 ----------GCGAUUCAAGUUGCUGCUGCAGUUGUUGCAGUUGUGCCGUUGCUGGUGCAGCAGCAACACGAGCUACAAGAUACUUUCUGUGCAACCAUAGAACUUCC ----------.........((((((((((((.(.((.((.(.....).)).)).).)))))))))))).................(((((((....)))))))..... ( -31.80, z-score = -0.48, R) >droSim1.chr3R 22146408 98 - 27517382 ----------GCGAUUCAAGUUGCUGCUGCAGUUGUUGCAGUUGUGCAGUUGCUGGUGCAGCAGCAACACGAGCUACAAGAUACUUUCUGUGCAACCAUAGAACUUCC ----------.........((((((((((((((..(((((....)))))..))...)))))))))))).................(((((((....)))))))..... ( -33.30, z-score = -0.65, R) >droSec1.super_13 1099019 98 - 2104621 ----------GCGAUUCAAGUUGCUGCUGCAGUUGUUGCAGUUGUGCAGUUGCUGGUGCAGCAGCAACACGAGCUACAAGAUACUUUCUGUGCAACCAUAGAACUUCC ----------.........((((((((((((((..(((((....)))))..))...)))))))))))).................(((((((....)))))))..... ( -33.30, z-score = -0.65, R) >droEre2.scaffold_4820 4733538 98 + 10470090 ----------GCGAUUCAAGUUGCUGCUGCAGUUGUUGCAGUUGUGCAGUUGCUGUUGCAGCAGCAACACGAGCUACAAGAUACUUUCUGUGCAACCAUAGAACUUCC ----------((.......((((((((.(((((..(((((....)))))..))))).)))))))).......))...........(((((((....)))))))..... ( -33.84, z-score = -1.10, R) >droAna3.scaffold_13340 1351767 82 + 23697760 ----------------------GCGAUUCAAGUUGC----AUAGCGAUGAUGUUGCUGUUGUUGCAACUUCAGCUACAAGAUACUUUCUGUGCAACCAUAGAACUUCC ----------------------(((((....)))))----.((((..(((.(((((.......))))).))))))).........(((((((....)))))))..... ( -21.30, z-score = -1.32, R) >droWil1.scaffold_181089 2449606 108 + 12369635 GUGCUUGUUGUUGUUUGUUGUUGCUGUAGCAAUUGUUAGAGUUGAACGGCAGCAGCAGCAGCAGCAACUUGAGCUACAAGAUACUUUCUGUGCAACCGUAGAACUUCC (((((((((((((((.(((((((((((..(((((.....)))))....))))))))))))))))))))..)))).))........(((((((....)))))))..... ( -38.40, z-score = -1.96, R) >consensus __________GCGAUUCAAGUUGCUGCUGCAGUUGUUGCAGUUGUGCAGUUGCUGGUGCAGCAGCAACACGAGCUACAAGAUACUUUCUGUGCAACCAUAGAACUUCC ...................((((((((((((.(.((.((.(.....).)).)).).)))))))))))).................(((((((....)))))))..... (-22.49 = -23.47 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:48 2011