| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,733,746 – 8,733,838 |
| Length | 92 |
| Max. P | 0.549002 |
| Location | 8,733,746 – 8,733,838 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 73.77 |
| Shannon entropy | 0.46219 |
| G+C content | 0.55583 |
| Mean single sequence MFE | -30.93 |
| Consensus MFE | -15.12 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8733746 92 + 23011544 -------GCGGUUCCCACCGCCGCAAAUGGGGGCGUGGCAGAUCGUGA-----CGCCCAGCAGAUAAAUCUCUGCCAACAGCGUA-----UCGAACUAAUCGGAUAAUG -------(((((....)))))(((......((((((.((.....)).)-----))))).(((((......))))).....)))..-----((((.....))))...... ( -33.20, z-score = -1.97, R) >droSim1.chr2L 8510693 83 + 22036055 -------GCGGUUCCCACCGCCGCAAAUGGGGGCGUGGCAGAUCGUGA-----CGCCCAGCAGAUAAAUCUCUGCCAACACCGUA-----UCGAACUGAU--------- -------(((((.......)))))..((((((((((.((.....)).)-----))))).(((((......))))).....)))).-----..........--------- ( -32.30, z-score = -2.31, R) >droSec1.super_3 4207154 92 + 7220098 -------GCGGUUCCCACCGCCGCAAAUGGGGGCGUGGCAGAUCGUGA-----CGCCCAGCAGAUAAAUCUUUGCCAACACCGUA-----UCGAACUGAUCGGAUAAUG -------(((((.......)))))..((((((((((.((.....)).)-----))))).(((((......))))).....)))).-----((((.....))))...... ( -31.30, z-score = -1.30, R) >droYak2.chr2L 11375199 92 + 22324452 -------GCGGUUCCCACCGCCUCAAAUGGGGGCGUGGCAGGUCGUGA-----CGCCCAGCAGAUAAAUCUAUGCGAACAGCGUA-----UCGAACUGAUCGGAUAAUG -------.((((..((((.(((((.....)))))))))(((.(((..(-----(((...(((..........))).....)))).-----.))).)))))))....... ( -28.40, z-score = -0.11, R) >droEre2.scaffold_4929 9319511 94 + 26641161 -------GCGGUUCCCACCGCC--AAAUGGGGGCGUGGCAGAUCGUGA-----CGCCCAGCAGAUAAAUCUCUGCCAGCAGCGUACUAAAUCGAACUGAUCGGAUAAG- -------(((((....))))).--......((((((.((.....)).)-----))))).(((((......)))))(((...((........))..)))..........- ( -30.30, z-score = -0.98, R) >droPer1.super_5 1482914 101 - 6813705 GAGAAGCCCUGCCCCCAUGAUGCUGAA--GAGGCGUGGCAGGUCGUGAGACAAUGCUCCAGUGAUAAAUCACGGAAAAUGUCCAA---AGUUCAAUAGAACUUAUG--- ..(.(((.(((((......(((((...--..))))))))))(((....)))...))).).((((....))))(((.....))).(---(((((....))))))...--- ( -30.10, z-score = -2.61, R) >consensus _______GCGGUUCCCACCGCCGCAAAUGGGGGCGUGGCAGAUCGUGA_____CGCCCAGCAGAUAAAUCUCUGCCAACAGCGUA_____UCGAACUGAUCGGAUAAU_ ........((((((((((.(((.(.....).))))))).....................(((((......))))).................))))))........... (-15.12 = -15.77 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:46 2011