| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,303,547 – 22,303,656 |
| Length | 109 |
| Max. P | 0.903515 |
| Location | 22,303,547 – 22,303,656 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 89.34 |
| Shannon entropy | 0.20113 |
| G+C content | 0.49027 |
| Mean single sequence MFE | -38.47 |
| Consensus MFE | -25.50 |
| Energy contribution | -27.37 |
| Covariance contribution | 1.86 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22303547 109 - 27905053 UUGCCCGGCCGGCUCAUUGUCCGCCUUUUGUCUAUUGUCUGGGC-AAUGGGCGG-AGGAUUAUUGGAACCAAUAAUUUAGCCGCGUCGCGCCAAGCACAGAUUCUUAAUCA ..((.(((((((((.....(((((((.(((((((.....)))))-)).))))))-)(((((((((....)))))))))))))).)))).))........(((.....))). ( -43.60, z-score = -3.19, R) >droSim1.chr3R 22142390 109 - 27517382 UUGCCCGGCCGGCUCAUUGUCCGCCUUUUGUCUAUUGUCUGGGC-AAUGGGCGG-AGGAUUGUUGGAACCAAUAAUUUAGCCGCGUCGCGCCAAGCACAGAUUCUUAAUCA ..((.(((((((((.....(((((((.(((((((.....)))))-)).))))))-)(((((((((....)))))))))))))).)))).))........(((.....))). ( -43.60, z-score = -2.93, R) >droSec1.super_13 1095015 109 - 2104621 UUGCCCGGCCGGCUCAUUGUCCGCCUUUUGUCUAUUGUCUGGGC-AAUGGGCGG-AGGAUUAUUGGAACCAAUAAUUUAGCCGCGUCGCGCCAAGCACAGAUUCUUAAUCA ..((.(((((((((.....(((((((.(((((((.....)))))-)).))))))-)(((((((((....)))))))))))))).)))).))........(((.....))). ( -43.60, z-score = -3.19, R) >droYak2.chr3R 4647284 105 + 28832112 ----UUAGCCGGCUCAUUGUCCGCCUUUUGUCUAUUGUCUGGGC-AAUGGGCGG-AGGAUUAUUGGAACCAAUAAUUUAGCCGCGUCGCGUCAAGCACAGAUUCUUAAUCA ----...((.((((.....(((((((.(((((((.....)))))-)).))))))-)(((((((((....)))))))))))))))((.((.....)))).(((.....))). ( -38.00, z-score = -3.19, R) >droEre2.scaffold_4820 4729404 105 + 10470090 ----UUGCCCGACUCAUUGUCCGCCUUUUGUCUAUUGUCUGGCC-AAUGGGCGG-AGGAUUAUUGGAACCAAUAAUUUAGACGCGUCGCGCCAAGCACAGAUUCUUAAUCA ----..((.((((.(....(((((((.(((.(((.....))).)-)).))))))-)(((((((((....)))))))))....).)))).))........(((.....))). ( -31.30, z-score = -1.59, R) >droAna3.scaffold_13340 1347479 98 + 23697760 -------------UUGUUGGCCGCCUUUUGUCUAUUGUCUGGGCAAAUGGGCGGUAGGAUUAUUGGUACCAAUAAUUUAGUUCCGUCGCGCCAAGAACAGAUUCUUAAUCA -------------((.(((((.(((.((((((((.....)))))))).)(((((..(((((((((....)))))))))....)))))))))))).))..(((.....))). ( -30.70, z-score = -2.19, R) >consensus ____CCGGCCGGCUCAUUGUCCGCCUUUUGUCUAUUGUCUGGGC_AAUGGGCGG_AGGAUUAUUGGAACCAAUAAUUUAGCCGCGUCGCGCCAAGCACAGAUUCUUAAUCA ......((((((((......((((((.(((((((.....))))).)).))))))..(((((((((....)))))))))))))).)))((.....))...(((.....))). (-25.50 = -27.37 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:44 2011