| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,288,126 – 22,288,241 |
| Length | 115 |
| Max. P | 0.813085 |
| Location | 22,288,126 – 22,288,241 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 84.37 |
| Shannon entropy | 0.24868 |
| G+C content | 0.45818 |
| Mean single sequence MFE | -30.92 |
| Consensus MFE | -24.85 |
| Energy contribution | -24.73 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22288126 115 + 27905053 UUGUUUUCGGUCGUUGUUGUUUUGCGUUUAAGACACCUUAGUCGUCUAUGU----AUGUAUGAAGAAAUACAAAACCACAGCGGGCCUCAGCAGCUUUUGUCCGAGAAUAAUCCCGCUC (((((((((((((((((.(((((((((....(((......)))....))))----)(((((......))))))))).)))))))((....)).........))))))))))........ ( -30.30, z-score = -1.90, R) >droSim1.chr3R 22126866 119 + 27517382 UUGUUUUCGCUCGCUGUUGUUUUGCGUUUAAGCCACCUUAGCCAUCUAUGUUUGUAUGUAUGUAGAAAUGCAAAACCACCGCGGGCCUCAGCAGCUUUUGUGCGAGAAUAAUCCCGCUC ((((((((((((((.((.((((((((((((((....))))....(((((((........))))))))))))))))).)).))))))....(((.(....))))))))))))........ ( -36.20, z-score = -2.88, R) >droSec1.super_13 1079282 119 + 2104621 UUGUUUUCGCUCGCUGUUGUUUUGCGUUUAAGCCACCUUAGCCAUCUAUGUUUGUAUGUAUAUAGAAAUACAAAACCACCGCGGGCCUCAGCAGCUUUUGUGCGAGAAUAAUCCCGCUC ((((((((((((((.((.((((((.(.(((((....))))).).(((((((........)))))))....)))))).)).))))))....(((.(....))))))))))))........ ( -32.10, z-score = -2.24, R) >droEre2.scaffold_4820 4712383 104 - 10470090 UUGUUUUCGCUCGUUGUUGUUUUGCGUUUGAACCACCUUAGCCACAUCU------AUGUAUGUAUGGCU---------CAGCGGGCCUCAGCAGCUUUUGGCCGAGAAUAAUCCCGCUC (((((((((..((..(((((........(((.((..((.((((((((..------....))))..))))---------.))..))..))))))))...))..)))))))))........ ( -25.10, z-score = 0.11, R) >consensus UUGUUUUCGCUCGCUGUUGUUUUGCGUUUAAGCCACCUUAGCCAUCUAUGU____AUGUAUGUAGAAAUACAAAACCACAGCGGGCCUCAGCAGCUUUUGUCCGAGAAUAAUCCCGCUC ((((((((((.((((((((.((((((.(((((....))))).).(((((((........)))))))..............)))))...)))))))....).))))))))))........ (-24.85 = -24.73 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:44 2011