| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,280,937 – 22,281,036 |
| Length | 99 |
| Max. P | 0.944587 |
| Location | 22,280,937 – 22,281,036 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 94.61 |
| Shannon entropy | 0.07421 |
| G+C content | 0.35354 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -21.20 |
| Energy contribution | -21.53 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22280937 99 - 27905053 UAGCUUAGAAUAGCAGCCCCAUUUCGUUUAUUGACUUCAUUUAUUAUGCUAUAUCUAAGCAGUCAAAACCUAAGGAACUUGGCCAUGAACUUGGCAAAC ..(((((((((((((..........(((....)))...........)))))).))))))).....................((((......)))).... ( -22.70, z-score = -1.94, R) >droSec1.super_13 1072258 99 - 2104621 UAGCUUAGAAUAGCAGCACAAUUUCGUUUAUUGCCUUAAUUUAAUAUGCUAUAUCUAAGCAGUCAAAACUUAAGGAACUUGGCCAUGAACUUGGCAAAC ..(((((((((((((....((((..((.....))...)))).....)))))).))))))).....................((((......)))).... ( -22.50, z-score = -1.68, R) >droSim1.chr3R 22119839 99 - 27517382 UAGCUUAGAAUAGCAGACCCAUUUCGUUUAUUGACUUAAUUAAAUAUGCUAUAUCUAAGCAGUCAAAACUUAAGGAACUUGGCCAUGAACUUGGCAAAC ..(((((((((((((.....(((..(((....)))..)))......)))))).))))))).....................((((......)))).... ( -23.50, z-score = -2.69, R) >consensus UAGCUUAGAAUAGCAGCCCCAUUUCGUUUAUUGACUUAAUUUAAUAUGCUAUAUCUAAGCAGUCAAAACUUAAGGAACUUGGCCAUGAACUUGGCAAAC ..(((((((((((((..........(((....)))...........)))))).))))))).....................((((......)))).... (-21.20 = -21.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:41 2011