| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,278,381 – 22,278,483 |
| Length | 102 |
| Max. P | 0.810368 |
| Location | 22,278,381 – 22,278,483 |
|---|---|
| Length | 102 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 70.39 |
| Shannon entropy | 0.57401 |
| G+C content | 0.56579 |
| Mean single sequence MFE | -39.62 |
| Consensus MFE | -15.12 |
| Energy contribution | -15.99 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22278381 102 - 27905053 ---UCCAAA--UCCCAAAUGGACAGCUGGCCUUGCUUUUUCCAGCACCGCCCGAAAU-GGGGGUGUUUUGCUGGUCUGGUCGGUGGGGCACGGCCUGCUUGGUUACCC ---.((((.--(((.....)))((((((((((..((....((((((.(((((.....-..)))))...)))))).......))..)))).))).))).))))...... ( -38.20, z-score = 0.01, R) >droSim1.chr3R 22117255 101 - 27517382 ---UCCAAA--UCCCAAAUGGACAGCUGGCCUUGCUUUUUCCAGCACCGCCCGAAAC--GGGGUGUUUGGCCGGUCUGGUCGUUGGGGCAAGGCCUGCUGGAUAACCC ---((((..--.......))))((((.(((((((((....(((((..(((((.....--.)))))...((((.....)))))))))))))))))).))))........ ( -45.20, z-score = -2.22, R) >droSec1.super_13 1069656 101 - 2104621 ---UCCAAA--UCCCAAAUGGACAGCUGGCCUUGCUUUUUCCAGCACCGCCCGAAAC--GGGGUGUUUGGCCGGUAUGGUCGUUGGGGCAAGGCCUGCUGGAUUACCC ---....((--((((....)).((((.(((((((((....(((((..(((((.....--.)))))...((((.....)))))))))))))))))).)))))))).... ( -45.50, z-score = -2.39, R) >droYak2.chr3R 4621811 102 + 28832112 ---UCCCAA--UCCCAAAUGGACAGCUGGCCUUGCCUUUUCCAGCAGCCCCCGAAUU-GGGGCUGUUUUGCCCGACUGGUCGGUGGGGCAAGGCCUGCUGGGUGACCC ---((((..--(((.....)))((((.(((((((((((....(((((((((......-)))))))))....((((....)))).))))))))))).)))))).))... ( -52.90, z-score = -3.31, R) >droEre2.scaffold_4820 4702744 101 + 10470090 ---UCCCAA--UCCCAAAUGGACAGCUGGCCUUGCCUUUUCCAGCAGCCCCCGAAAC--GGGGUGUUUUGCUCAACUGGUCGGUGGGGCAAGGCCUGCUGGGUGACCC ---((((..--(((.....)))((((.(((((((((((..((((.((((((((...)--))))......)))...)))).....))))))))))).)))))).))... ( -45.70, z-score = -1.76, R) >droAna3.scaffold_13340 1319014 108 + 23697760 UUCUCCCAACCUCCCAAAUGGGCAGCUGGCCUUGCCUUUUCCAGCAGCUCAGGGUUUCACCUGAGAUUUCAGGGUUGCGACCCUUUGGCUUGGCCUACUUUAUUACUU ..........(((((....))).))..((((..(((...........((((((......)))))).....(((((....)))))..)))..))))............. ( -35.10, z-score = -1.30, R) >dp4.chr2 14134162 95 - 30794189 ---UCCCA---UCACAAUC--ACAGCU-GCCUUGC-UUCUCCAGCAAGAAACUCGAA-CUCGAAACUGUCAAGGACUUGACA-UUUGGCAAGGCCUGCUUGUGUCUC- ---.....---.......(--(((((.-(((((((-(...............(((..-..)))...((((((....))))))-...))))))))..)).))))....- ( -27.20, z-score = -2.10, R) >droPer1.super_0 5515448 95 + 11822988 ---UCCCA---UCACAAUC--ACAGCU-GCCUUGC-UUCUCCAGCAAGCAACUCGAA-CUCGAAUCUGUCAAGGACUUGACA-UUUGGCAAGGCCUGCUUGUGUCUC- ---.....---.......(--(((((.-(((((((-(...............(((..-..)))...((((((....))))))-...))))))))..)).))))....- ( -27.20, z-score = -1.87, R) >consensus ___UCCCAA__UCCCAAAUGGACAGCUGGCCUUGCCUUUUCCAGCACCCCCCGAAAC__GGGGUGUUUUGCCGGACUGGUCGGUGGGGCAAGGCCUGCUGGAUUACCC .......................(((.(((((((((..................................................))))))))).)))......... (-15.12 = -15.99 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:40 2011