| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,271,397 – 22,271,489 |
| Length | 92 |
| Max. P | 0.966106 |
| Location | 22,271,397 – 22,271,489 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.44 |
| Shannon entropy | 0.37705 |
| G+C content | 0.50301 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -23.67 |
| Energy contribution | -24.87 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.966106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22271397 92 - 27905053 AUUUAGUGCAGAUUGUCCAAAAUUGGCACUAGACGAUUCUGGCCA-CCUUGCCCGAUUCAAUCCGGCUCGCAUUGGCUUGGAUUGCCAGCAUG--------- .((((((((.((((......)))).))))))))((((((.(((((-...((((((........)))...))).))))).))))))........--------- ( -29.30, z-score = -1.72, R) >droEre2.scaffold_4820 4695767 92 + 10470090 AUUUAGUGCAGAUUGUCCAAAAUUGGCACUAGACGAUUCUGGCCA-CCUUGCCCGAUCCAAUCCGGCUUGCAUUGGCUUGGAUUGCCAGCUCG--------- .((((((((.((((......)))).))))))))(((..(((((..-((..((((((.((.....)).)))....)))..))...))))).)))--------- ( -30.00, z-score = -2.01, R) >droYak2.chr3R 4614814 101 + 28832112 AUUUAGUGCAGAUUGUCCAAAAUUGGCACUAGACGAUUCUGGCCA-CCUUGCCCGAUCCAAUCCGGCUUGCAUUGGCUUGGAUUGCUGGCUUGGAUUGCUGG .((((((((.((((......)))).)))))))).....(..((..-((..(((((((((((.((((......)))).))))))))..)))..))...))..) ( -35.80, z-score = -2.12, R) >droSec1.super_13 1062768 92 - 2104621 AUUUAGUGCAGAUUGUCCAAAAUUGGCACUAGACGAUUCUGGCCA-CCUUGCCCGAUCCAAUCCGGCUCGCAUUGGCUUGGAUUGCCAGCUUG--------- .((((((((.((((......)))).)))))))).....(((((..-((..((((((.((.....)).)))....)))..))...)))))....--------- ( -30.30, z-score = -2.10, R) >droSim1.chr3R 22110352 92 - 27517382 AUUUAGUGCAGAUUGUCCAAAAUUGGCACUAGACGAUUCUGGCCA-CCUUGCCCGAUCCAAUCCGGCUCGCAUUGGCUUGGAUUGCCAGCUUG--------- .((((((((.((((......)))).)))))))).....(((((..-((..((((((.((.....)).)))....)))..))...)))))....--------- ( -30.30, z-score = -2.10, R) >droVir3.scaffold_13047 4815604 77 - 19223366 AUUUAGUGCAGAUUG-CCAAAAUUGGCAGCAGAUUCUUGUACUGAGUCUUAACCGGCGCGGCCCAGUCUCAGUUGGAA------------------------ (((((((((((((((-(((....)))))).....)).)))))))))).....(((((..(((...)))...)))))..------------------------ ( -22.10, z-score = -0.82, R) >consensus AUUUAGUGCAGAUUGUCCAAAAUUGGCACUAGACGAUUCUGGCCA_CCUUGCCCGAUCCAAUCCGGCUCGCAUUGGCUUGGAUUGCCAGCUUG_________ .((((((((.((((......)))).))))))))((((((.(((((.....(((.(((...))).)))......))))).))))))................. (-23.67 = -24.87 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:39 2011