| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,248,710 – 22,248,819 |
| Length | 109 |
| Max. P | 0.516969 |
| Location | 22,248,710 – 22,248,819 |
|---|---|
| Length | 109 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.30 |
| Shannon entropy | 0.39385 |
| G+C content | 0.43855 |
| Mean single sequence MFE | -34.56 |
| Consensus MFE | -11.42 |
| Energy contribution | -11.62 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.516969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22248710 109 + 27905053 AAAAGUUUUUUAGGGCCAGCUUGUGUUUAU-AAGA-UGGCC---GAGUAGCGGCGUUCGGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCAUCAUAUUUGCGCGAGAGUU .((((((((....(((((((((((....))-))((-(((((---(((........)))))))))).)))))))))))-))))...((((.(((.((.......)).))).)))). ( -36.70, z-score = -2.54, R) >droSim1.chr3R 22086838 109 + 27517382 GAAAGUUUUUUAGGGCCAGCUUGUGUUUAU-AAGA-UGGCC---GAGUAGCGGCGUUCGGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCAUCAUAUUUGCGCGAGAGUU .((((((((....(((((((((((....))-))((-(((((---(((........)))))))))).)))))))))))-))))...((((.(((.((.......)).))).)))). ( -36.80, z-score = -2.48, R) >droSec1.super_13 1040146 109 + 2104621 AAAAGUUUUUUAGGGCCAGCUUGUGUUUAU-AAGA-UGGCC---GAGUAGCGGCGUUCGGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCAUCAUAUUUGCGCGAGAGUU .((((((((....(((((((((((....))-))((-(((((---(((........)))))))))).)))))))))))-))))...((((.(((.((.......)).))).)))). ( -36.70, z-score = -2.54, R) >droYak2.chr3R 4591665 109 - 28832112 AAAAGUUUUUUAGGGCCAGCUUGUGUUUAU-AAGA-UGGCC---AAGUAGCGGCGUUCGGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCAUCAUAUUUGCGCGGCAGUU .............(((((.(((((....))-))).-)))))---((((((..(.(((((((((.....))))).)))-).)..)))))).(((.((.......)).)))...... ( -33.90, z-score = -1.68, R) >droEre2.scaffold_4820 4671518 108 - 10470090 -AAAAGUUUUUAGGGCCAGCUUGUGUUUAU-AAGA-UGGCC---GAGUAGCGGCGUUCGGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCAUCAUAUUUGCGCGAGAGUU -.(((((((....(((((((((((....))-))((-(((((---(((........)))))))))).))))))).)))-))))...((((.(((.((.......)).))).)))). ( -37.30, z-score = -2.78, R) >droWil1.scaffold_181130 7103953 109 + 16660200 -AAAGUUUUUU--GGCCAGCUUGUGUUUAUAAGUAGUGGAAGUUGUGUGGAAACGUU-GGCUAUCAGUUGGCCAGAAACUUUACUGCUUACGUUCGUCAUAUUUACGCGUGGA-- -(((((((((.--((((((((.(.........(((((.((.(((.......))).))-.))))))))))))))))))))))).....(((((..(((.......)))))))).-- ( -27.50, z-score = -0.40, R) >droPer1.super_3 5892437 111 - 7375914 AAAGUUUUUUUAGGGCCAGCUUGUGUUUAUUAAGA-UGGCCC--AAGUAAGAACGUUUGGCUAUCAGUUGCCAGGAA-CUUUACUGCUUACGUUCAUCAUAUUUACGCGUGAGUU ............((((((.((((.......)))).-))))))--.((((((....((((((........))))))..-.))))))((((((((.............)))))))). ( -33.42, z-score = -2.82, R) >dp4.chr2 12042482 109 - 30794189 AAAGUUUUUUUAGGGCCAGCUUGUGUUUAU-AAGA-UGGCC---AAGUAAGAACGUUUGGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCAUCAUAUUUACGCGUGAGUU ((((((((.....(((((((((((....))-))((-(((((---(((........)))))))))).)))))))))))-))))...((((((((.............)))))))). ( -35.62, z-score = -3.65, R) >droAna3.scaffold_13088 123206 109 + 569066 AAAAGUUUUUUAGGGCCAGCUUGUGUUUAU-AAGA-UGGCC---AAGUAGGAGCGUUCGGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCAUCAUAUUUACGCGAGAGUU ...................(((((((..((-(.((-((..(---((((((....(((((((((.....))))).)))-)....))))))..)..)))).)))..))))))).... ( -33.00, z-score = -2.37, R) >droVir3.scaffold_13047 4782574 90 + 19223366 AAAAGUUUU----GGCCAGCAGGAGCUG-------------------CGUUGGUGUU-GGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCGUCAUAUUUACGCGUGAGUU .((((((((----(((((((.(((((((-------------------((....)).)-)))).)).)))))))))))-))))...(((((((..(((.......)))))))))). ( -34.00, z-score = -3.31, R) >droMoj3.scaffold_6540 12527875 90 - 34148556 AAAAGUUUU----GGCCAGCAGGAGCUA-------------------UGUGGGUGUU-GGCUAUCAGUUGGCCAAAA-CUUUACUGCUUACGUUCGUCAUAUUUGCGCGUGAGUU .((((((((----(((((((.(((((((-------------------.........)-)))).)).)))))))))))-))))...((((((((.((.......)).)))))))). ( -37.10, z-score = -4.46, R) >droGri2.scaffold_14906 10217967 97 + 14172833 AAAAGUUUU----GGCCAGCAGGCGUUGGUUCUAG------------UGUUGCUGUU-GGCUAUCAGUUGGCCAGAA-CUUUACUGCUUACGUUCGUCAUAUUUACGCGUGAGUU .((((((((----(((((((.(((((((....)))------------))))((....-.)).....)))))))))))-))))...(((((((..(((.......)))))))))). ( -32.70, z-score = -2.46, R) >consensus AAAAGUUUUUUAGGGCCAGCUUGUGUUUAU_AAGA_UGGCC___GAGUAGCGGCGUUCGGCUAUCAGUUGGCCAGAA_CUUUACUGCUUACGUUCAUCAUAUUUACGCGUGAGUU .............(((((((....(((...............................))).....)))))))............((((.(((.............))).)))). (-11.42 = -11.62 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:37 2011