| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,246,468 – 22,246,559 |
| Length | 91 |
| Max. P | 0.973206 |
| Location | 22,246,468 – 22,246,559 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.11 |
| Shannon entropy | 0.59697 |
| G+C content | 0.39007 |
| Mean single sequence MFE | -21.41 |
| Consensus MFE | -10.48 |
| Energy contribution | -10.91 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.973206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22246468 91 - 27905053 ----UUCACCUUCCAC---GAAAUGUU-CGGA----GCAGCGUUAACGCUAAAUUAAGAAA-UUUUUGGCAGAACUAAUGUCCCG-CAUUAGUCAAAUGUCAAAA-- ----(((........(---((.....)-))..----..((((....)))).......))).-.((((((((..(((((((.....-)))))))....))))))))-- ( -20.50, z-score = -2.11, R) >droAna3.scaffold_13088 120724 96 - 569066 UCCACUCCCACUUCUCCUUCUAGCGUU-C--A----CCUUUCUCUUCCGUAAAUUAAGAAA-UUUUUGGCAGAACUAAUGUCCCG-CAUUAGUCAAAUGUCAAAA-- ...........((((.......(((..-.--.----...........)))......)))).-.((((((((..(((((((.....-)))))))....))))))))-- ( -13.68, z-score = -2.21, R) >droEre2.scaffold_4820 4666944 91 + 10470090 ----UUCACCUUCCAG---GAAAUUUU-CUGA----GCAGCGUUAACGCUAAAUUAAGAAA-UUUUUGGCAGAACUAAUGUCCCG-CAUUAGUCAAAUGUCAAAA-- ----....((.....)---)((((((.-.(((----..((((....))))...)))..)))-)))((((((..(((((((.....-)))))))....))))))..-- ( -22.40, z-score = -3.08, R) >droYak2.chr3R 4589066 92 + 28832112 ----UUCACCUUCCAG---GAAAUUUUGCAGA----GCAGCGUUAACGCUAAAUUAAGAAA-UUUUUGGCAGAACUAAUGUCCCG-CAUUAGUCAAAUGUCAAAA-- ----....((.....)---)(((((((.....----..((((....)))).......))))-)))((((((..(((((((.....-)))))))....))))))..-- ( -20.64, z-score = -2.05, R) >droSec1.super_13 1037531 91 - 2104621 ----UUCACCUUCCAG---GAAAUGUU-CGGA----GCAGCGUUAACGCUAAAUUAAGAAA-UUUUUGGCAGAACUAAUGUCCCG-CAUUAGUCAAAUGUCAAAA-- ----(((...((((.(---((....))-))))----).((((....)))).......))).-.((((((((..(((((((.....-)))))))....))))))))-- ( -21.70, z-score = -2.25, R) >droSim1.chr3R 22084221 91 - 27517382 ----UUCACCUUCCAG---GAAAUGUU-CGGA----GCAGCGUUAACGCUAAAUUAAGAAA-UUUUUGGCAGAACUAAUGUCCCG-CAUUAGUCAAAUGUCAAAA-- ----(((...((((.(---((....))-))))----).((((....)))).......))).-.((((((((..(((((((.....-)))))))....))))))))-- ( -21.70, z-score = -2.25, R) >droPer1.super_3 5889292 95 + 7375914 ----UUUACCUUCGAGGCUGCAGCGUU-CGGA----GCAGCGUUAGCCGUAAAUUAAGAAAUUUUUUGGCAGAACUAAUGUUCCG-CAUUAGUCAAAUGUCAAAA-- ----((((((((((((((....)).))-))))----)..((....)).)))))..........((((((((..(((((((.....-)))))))....))))))))-- ( -25.30, z-score = -1.67, R) >dp4.chr2 12039284 95 + 30794189 ----UUCACCUUCGAGGCUGCAGCGUU-CGGA----GCAGCGUUAGCCGUAAAUUAAGAAAUUUUUUGGCAGAACUAAUGUUCCG-CAUUAGUCAAAUGUCAAAA-- ----(((..(((((((((....)).))-))))----)..((....))..........)))...((((((((..(((((((.....-)))))))....))))))))-- ( -24.30, z-score = -1.35, R) >droWil1.scaffold_181130 9568240 84 + 16660200 ------------------CUUAGCCCCAUUGC----GUGGCCUUAACGUUAAAUUAAGAAA-UUUCAGCUAGAACUAAUGCCCCGCCAUUAGUCAAAUGUCACAAAA ------------------....((......))----((((((((((.......)))))...-.........((.((((((......))))))))....))))).... ( -13.50, z-score = -0.95, R) >droMoj3.scaffold_6540 12524312 103 + 34148556 CUUUCUUAGCGGGUUACGUGUACCGCUGCAGCAAUGGCAAUUGCAAAGCUAAAUUAAGAAA-UUUUUGGCAGAACUAAUGCGGCG-CAUUAGUCAAAUGUCAAAA-- .(((((((((((..........))))....(((((....)))))..........)))))))-.((((((((..((((((((...)-)))))))....))))))))-- ( -30.90, z-score = -2.06, R) >droVir3.scaffold_13047 4779485 102 - 19223366 AUUUCUUGUCCGG-AACGUGUACCAUUGGAGCAAUGGCAACAGCAAAGCUAAAUUAAGAAA-UUUUUGGCAGAACUAAUGCGGAG-CAUUAGUCAAAUGUCAAAA-- ((((((((.....-...((...((((((...))))))..))(((...)))....)))))))-)((((((((..((((((((...)-)))))))....))))))))-- ( -25.70, z-score = -1.69, R) >droGri2.scaffold_14906 10215567 102 - 14172833 GUUCCUUCUCAGG-AAUGUAUACCGUGAGAGAAACGACAACUGCAAAGCUAAGUAAAGAAA-UUUUUGGAAGAACUAAUACGGCG-CAUUAGUCAAAUGUCAAAU-- (((..((((((((-........)).)))))).)))((((.........((((..(((....-)))))))............(((.-.....)))...))))....-- ( -16.60, z-score = 0.29, R) >consensus ____UUCACCUUCCAG__UGAAACGUU_CGGA____GCAGCGUUAACGCUAAAUUAAGAAA_UUUUUGGCAGAACUAAUGUCCCG_CAUUAGUCAAAUGUCAAAA__ ...............................................................((((((((..(((((((......)))))))....)))))))).. (-10.48 = -10.91 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:36 2011