| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,732,721 – 8,732,825 |
| Length | 104 |
| Max. P | 0.997833 |
| Location | 8,732,721 – 8,732,825 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 95.83 |
| Shannon entropy | 0.08125 |
| G+C content | 0.45667 |
| Mean single sequence MFE | -31.09 |
| Consensus MFE | -27.32 |
| Energy contribution | -28.82 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -4.02 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.997833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8732721 104 - 23011544 CUAGAUGGCUAUCGCUCUCCUGCUUCCCACCGUCUUCGUGGUCGAUGAUGUUAUGGCUGAAAUUUAAUUUUAGCCAUGAUCUAUUGUCGACUGACCUUCUUCGU ..((((((.....((......))......))))))..((((((((..((((((((((((((((...))))))))))))))..))..)))))).))......... ( -33.80, z-score = -4.91, R) >droSim1.chr2L 8509683 104 - 22036055 CUAGAUGGCUAUCGCUCUCCUGCUUCCCACCGUCUUCGUGGUCGAUGAUGUUAUGGCUGAAAUUUAAUUUUAGCCAUGAUCUAUUGUCGACUGACCUUCUUCGU ..((((((.....((......))......))))))..((((((((..((((((((((((((((...))))))))))))))..))..)))))).))......... ( -33.80, z-score = -4.91, R) >droSec1.super_3 4206152 104 - 7220098 CUAGAUGGCUAUCGCUCUCCUGCUUCCCAACGUCUUCGUGGUCGAUGAUGUUAUGGCUGAAAUUUAAUUUUAGCCAUGAUCUAUUGUCGACUGACCUUCUUCGU ..(((((......((......)).......)))))..((((((((..((((((((((((((((...))))))))))))))..))..)))))).))......... ( -31.42, z-score = -4.09, R) >droYak2.chr2L 11374134 104 - 22324452 CUAGAUGGCUAUCGCUCUCCUGCUUCCCACCGCCUUCGUGGUCGAUGAUGUUAUGGCUGAAAUUUAAUUUUAGCCAUGAUCUAUUGUCGACUGACCUUCUUCGU ...((.(((....((......))........))).))((((((((..((((((((((((((((...))))))))))))))..))..)))))).))......... ( -31.70, z-score = -4.17, R) >droEre2.scaffold_4929 9318488 104 - 26641161 CUAGAUGGCUAUCGCUCUCCUGCUUCCCACCGUCUUCGUGGUCGAUGAUGUUAUGGCUGAAAUUUAAUUUUAGCCAUGAUCUAUUGUCGACUGACCUUCUUCGU ..((((((.....((......))......))))))..((((((((..((((((((((((((((...))))))))))))))..))..)))))).))......... ( -33.80, z-score = -4.91, R) >droAna3.scaffold_12916 10371973 102 - 16180835 --CUAUAGCUCUCGCUCUCCCGCUUCCCACCGUCUUCGUGGCCGAUGAUGUUAUGGCUGAUAUUUAAUUUUAGCCAUGAUCUAUAGCCGACUGACCUUCUUCGU --....(((....)))...............(((....((((..(((..(((((((((((.........))))))))))).))).))))...)))......... ( -22.00, z-score = -1.17, R) >consensus CUAGAUGGCUAUCGCUCUCCUGCUUCCCACCGUCUUCGUGGUCGAUGAUGUUAUGGCUGAAAUUUAAUUUUAGCCAUGAUCUAUUGUCGACUGACCUUCUUCGU ..((((((.....((......))......))))))..((((((((((((((((((((((((((...))))))))))))))..)))))))))).))......... (-27.32 = -28.82 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:45 2011