| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,234,459 – 22,234,550 |
| Length | 91 |
| Max. P | 0.938343 |
| Location | 22,234,459 – 22,234,550 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.51 |
| Shannon entropy | 0.19548 |
| G+C content | 0.56608 |
| Mean single sequence MFE | -32.98 |
| Consensus MFE | -30.58 |
| Energy contribution | -30.06 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.938343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22234459 91 - 27905053 AAGCCAUUGGGGCGGCAGUUUGUUGGUUGGGUGGCUAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAAUC--GAGCUCCAGAGAGA------- .(((((((.((.((((.....)))).)).))))))).(((((...((....)).....(((((.....)))))....--...)))))......------- ( -30.00, z-score = -1.83, R) >droSim1.chr3R 22072165 92 - 27517382 AAGCCAUUGGGGCGGCAGUUUGUUGGUUGGGUGGCUAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAAUCGAGAGCUCCAGAGCG-------- .(((((((.((.((((.....)))).)).))))))).(((((...((....)).....(((((.....))))).........))))).....-------- ( -30.00, z-score = -1.38, R) >droSec1.super_13 1025539 92 - 2104621 AAGCCAUUGGGACGGCAGUUUGUUGGUUGGGUGGCUAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAAUCGAGAGCUCCAGAGCG-------- .(((((((.(..((((.....))))..).))))))).(((((...((....)).....(((((.....))))).........))))).....-------- ( -28.00, z-score = -0.93, R) >droYak2.chr3R 4576786 98 + 28832112 AAGCCAUUGGGGCGGCAGCUUGUUGGCCGGGCGGCAAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAAUC--GAGCUCCAUAGCUCCAGAGCG ..((..(((((((((.((((((....((((((.((...((..(..((....))..)..))..).).))))))....)--)))))))...))))))).)). ( -37.70, z-score = -1.37, R) >droEre2.scaffold_4820 4654978 88 + 10470090 AAGCCAUUGGGGCGGCAGUUUGCCGGCUGGGUGGCACUGGGGAAAUGGUGACAAAUAACUUGGACGGCCCGGGAAUC--GAGCUCCAGAG---------- ..((((((.((.((((.....)))).)).)))))).((((((...((....)).....(((((.....)))))....--...))))))..---------- ( -39.20, z-score = -3.08, R) >consensus AAGCCAUUGGGGCGGCAGUUUGUUGGUUGGGUGGCUAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAAUC__GAGCUCCAGAGCG________ ..((((((.((.((((.....)))).)).))))))..(((((...((....)).....(((((.....))))).........)))))............. (-30.58 = -30.06 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:35 2011