| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,221,926 – 22,222,028 |
| Length | 102 |
| Max. P | 0.505529 |
| Location | 22,221,926 – 22,222,028 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.75 |
| Shannon entropy | 0.50348 |
| G+C content | 0.42932 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -9.88 |
| Energy contribution | -9.63 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22221926 102 + 27905053 CUCACAUCCACCCGAGGGAAG-GCAUAAAUUGUACAACCAAUUUAAGGCCUAAAAACCACUUUU---GCCUCUAUAUUCGGGA-GCUCAACG-CUACUAUUCUUUAUU--------- ..........(((((((((.(-((((((((((......))))))).((........)).....)---))))))...))))))(-((.....)-)).............--------- ( -22.70, z-score = -2.35, R) >droSim1.chr3R 22059620 102 + 27517382 CUCGCAUCCACCCGAGGGAAG-UUAUAAAUUGGACAACCAAUUUAAGGCCUAAAAACCACUUUU---GCCUCUAUAUUCGGGA-GCUCAACG-CUACUAUUCUUUAUU--------- ..........((((((.....-...((((((((....))))))))((((..(((......))).---)))).....))))))(-((.....)-)).............--------- ( -21.60, z-score = -1.49, R) >droSec1.super_13 1000551 102 + 2104621 CUCGCAUCCACCCGAGGGAAG-GCAUAAAUUGGACAACCAAUUUAAGGCCUAAAAACCCCUUUU---GCCUCUAUAUUCGGGA-GCUCAACG-GUACUAUUCUUUAUU--------- ..........(((((((((.(-(((((((((((....)))))))).((........)).....)---))))))...)))))).-........-...............--------- ( -23.10, z-score = -0.59, R) >droYak2.chr3R 4564446 102 - 28832112 CUCGCAUCCACCCGAGGGAAG-GCAUAAAUUGGACAACCAAUUUACGGCCUAAAAACCACUUUU---GCCUCUAUAUUCGGGA-GCUCAACG-CUACUAUUUUUUAUU--------- ..........(((((((((.(-(((((((((((....)))))))).((........)).....)---))))))...))))))(-((.....)-)).............--------- ( -25.70, z-score = -2.80, R) >droEre2.scaffold_4820 4640230 102 - 10470090 CUCGCUUCCACCCGAGGGAAG-GCACAAAUUGGACAACCAAUUUGCGGCCCAAAAACCACUUUU---GCCCCUAUAUUCGGGA-GCUCAACG-CUACUAUUUUUUAUU--------- ...((((((.....((((..(-((.((((((((....))))))))..)))(((((.....))))---).))))......))))-))......-...............--------- ( -29.20, z-score = -3.09, R) >droAna3.scaffold_13088 95340 97 + 569066 CCUACCCUCACCCGGGAGAAA-GCAUAAAUUGGACAACCAAUUUAAGGCCUAAAAACCACUUUUG----GUUUAUAUUCAGGA-GCUCAACUUUUUUUUUGCC-------------- (((.(((......))).(((.-((.((((((((....))))))))..))....((((((....))----))))...)))))).-...................-------------- ( -20.30, z-score = -0.98, R) >dp4.chr2 12012682 112 - 30794189 CCCUCCUUCCCCCGAGGGAAG-GCAUAAAUUGGACAACCAAUUUAAGGCCUAAAAACCACUUUU---GCGUUUAUAUUCAGCC-GCUCAACGUCUUCUGUUUAUUUUCUUUUUUUUU .((((........))))((((-((.((((((((....)))))))).(((.((.((((((....)---).)))).))....)))-.......)))))).................... ( -23.70, z-score = -1.76, R) >droPer1.super_3 5862140 105 - 7375914 CCCUCCUUCCCCCGAGGGAAG-GCAUAAAUUGGACAACCAAUUUAAGGCCUAAAAACCACUUUU---GCGUUUAUAUUCAGCC-GCUCAACGUCUUCUCUUUAUUUUCUU------- .............((((((((-((.((((((((....)))))))).(((.((.((((((....)---).)))).))....)))-.......)))))))))).........------- ( -24.70, z-score = -2.66, R) >droWil1.scaffold_181130 7070628 102 + 16660200 CUCACAUUUACCCAAGGGGAGCGCAUAAAUUGGACAACCAAUUUAAGGCCUAAAAACCACUUUUUUUGCGCUUAUAUUCGAGCCGCUCAGCU-CAGCUCACUA-------------- ..........((....))(((((((((((((((....)))))))).((........))........)))))))......((((......)))-).........-------------- ( -26.20, z-score = -2.68, R) >droGri2.scaffold_14906 10189172 94 + 14172833 UCGCCGUCUGCCCGAGGGAAC-GCAUAAAUUGGACAACCAAUUUAAGGCCCAAAAACCACUUUUAC--CGUUUAUAUUCAUGC-GCUCGAACUUUUUU------------------- ....((..(((..(((.((((-(..((((((((....)))))))).((........))........--)))))...)))..))-)..)).........------------------- ( -17.40, z-score = -0.29, R) >droVir3.scaffold_13047 4751338 94 + 19223366 CUGGCGUCUGCCCGGGGGAAC-GCAUAAAUUGGGCAACCAAUUUAAGGCCUAAAAACCACUUUUAC--CGUUUAUAUUCAUGC-GCUCGAACUUUUUU------------------- ((((.(....)))))..((.(-(((((((((((....)))))))).((..(((((.....))))))--)...........)))-).))..........------------------- ( -22.10, z-score = -0.41, R) >droMoj3.scaffold_6540 12496196 98 - 34148556 CCUUUGUCGGGCGGCAGGGGC-GCAUAAAUUGGACAACCAAUUUAAGGCCUAAAAACCACUUUUAC--CGUUUAUAUUCGUGC-GCGUGAACUUUUUUAUUU--------------- .(((((((....)))))))((-(((((((((((....)))))))..((..(((((.....))))))--)..........))))-))................--------------- ( -23.50, z-score = -0.40, R) >consensus CUCGCAUCCACCCGAGGGAAG_GCAUAAAUUGGACAACCAAUUUAAGGCCUAAAAACCACUUUU___GCGUUUAUAUUCGGGA_GCUCAACG_CUUCUAUUUUUU_U__________ .............(((.........((((((((....)))))))).((........))...........................)))............................. ( -9.88 = -9.63 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:31 2011