| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,219,705 – 22,219,797 |
| Length | 92 |
| Max. P | 0.527399 |
| Location | 22,219,705 – 22,219,797 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 62.50 |
| Shannon entropy | 0.59432 |
| G+C content | 0.29960 |
| Mean single sequence MFE | -18.06 |
| Consensus MFE | -8.17 |
| Energy contribution | -7.67 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22219705 92 - 27905053 GAUUUACCCAAAUUUUGUUAACUAUUUUUUGUGAGAAUAAUACAGCAGAGCCUUGGGCUAUUUG------------ACAAGUU------UUAUUUUUCCAUUUUAUACAA ......(((((.(((((((...(((((((...)))))))....)))))))..))))).......------------.......------..................... ( -11.20, z-score = 0.12, R) >droSec1.super_13 998303 108 - 2104621 UAUUUACCCAAGUUUUGUCAACUAUUUUUUGUGAGAAUAAUACAGCAGAGCCUUGGGCUAUUUAUUUUCAUGCUUCGCAUGUUGACAAGUUUUUUU--CCUUUUAUACAA .............(((((((((........((((((((((........((((...))))..)))))))))).........))))))))).......--............ ( -20.13, z-score = -1.42, R) >droSim1.chr3R 22057370 110 - 27517382 UAUUUACCCAAGUUUUGUCAACUAUUUUUUGUGAGAAUAAUACAGCAGAGCCUUGGGCUAUUUGUUUUCAUGCUUCGCAUGUUGACAAGUUUUUUUUCCCUUUUAUACAA ......((((((((((((....(((((((...))))))).....)))))).))))))..(((((((..(((((...)))))..))))))).................... ( -25.40, z-score = -2.98, R) >droGri2.scaffold_14906 10186635 95 - 14172833 GGUAAAUUCACAUCUUGUGUAGCUUAUGUUUUAAGCACAA-GUUUUAGGAUUAGAAACUGUAA-------------GUAAUUUGAAAAACUUAUUGUGCUUCUUAAAUA- .............((((((((((....)))....))))))-).(((((((......((.((((-------------((..........)))))).))...)))))))..- ( -15.50, z-score = 0.02, R) >consensus GAUUUACCCAAAUUUUGUCAACUAUUUUUUGUGAGAAUAAUACAGCAGAGCCUUGGGCUAUUUG____________GCAAGUUGACAAGUUUUUUUUCCCUUUUAUACAA ......(((((((((((((.......(((.....)))......))))))).))))))..................................................... ( -8.17 = -7.67 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:28 2011