| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,213,023 – 22,213,079 |
| Length | 56 |
| Max. P | 0.566512 |
| Location | 22,213,023 – 22,213,079 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 58.28 |
| Shannon entropy | 0.55754 |
| G+C content | 0.55649 |
| Mean single sequence MFE | -16.17 |
| Consensus MFE | -10.78 |
| Energy contribution | -10.23 |
| Covariance contribution | -0.54 |
| Combinations/Pair | 1.47 |
| Mean z-score | -0.42 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22213023 56 - 27905053 UUCUUUUCGACGUCCUUGGGGGGCGGUGGCUAUUGGGUGUUGACUAGGGGAAGUGG ((((..(((((..((......(((....)))...))..)))))..))))....... ( -14.50, z-score = -0.21, R) >droPer1.super_3 5853089 51 + 7375914 --UUCUUGGCUGCCUCCAAGGGGAUCCUAUAAGGAGGUAUUGGAGGAGGGGAG--- --(((((.....(((((((.....(((.....)))....))))))).))))).--- ( -17.00, z-score = -0.53, R) >dp4.chr2 12003863 51 + 30794189 --UUCUUGGCUGCCUCCAAGGGGAUCCUAUAAGGAGGUAUUGGAGGAGGGGAG--- --(((((.....(((((((.....(((.....)))....))))))).))))).--- ( -17.00, z-score = -0.53, R) >consensus __UUCUUGGCUGCCUCCAAGGGGAUCCUAUAAGGAGGUAUUGGAGGAGGGGAG___ ..(((((.(.(((((((...((....))....))))))).).)))))......... (-10.78 = -10.23 + -0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:27 2011