| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,209,182 – 22,209,240 |
| Length | 58 |
| Max. P | 0.506941 |
| Location | 22,209,182 – 22,209,240 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 58.28 |
| Shannon entropy | 0.76306 |
| G+C content | 0.34828 |
| Mean single sequence MFE | -9.32 |
| Consensus MFE | -3.38 |
| Energy contribution | -2.82 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.73 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22209182 58 - 27905053 UGCCUAAAAUACAGAUUCCCACCUUCUUUGGUGAUUCCAAAGAAUGGGAUCUUUUUAA ....(((((...((((.((((..((((((((.....))))))))))))))))))))). ( -17.80, z-score = -3.62, R) >droSim1.chr2h_random 793290 58 - 3178526 UACCAAAAAUACAAGUUCCCACCUUUACUGAAGAAGAAAAAGAGUUGGACUUUUUCUC ............((((.((.((((((.((.....))..)))).)).))))))...... ( -6.20, z-score = 0.59, R) >droSec1.super_80 44630 58 - 135508 AACCAAAAAUACAAGUUCCUACCUUUACUGGAGAAGUCAAAUAGUGGGACUUAUUCUU ............((((.(((((..(((((.....)))..))..)))))))))...... ( -9.30, z-score = -0.10, R) >apiMel3.GroupUn 79017205 58 - 399230636 UGCCUUAAAUAAAAUUGCCAAUUUUUAACGAAACUCCUAAAGAUUGAAAAUUUCAGAA ...........(((((..(((((((((..........)))))))))..)))))..... ( -6.00, z-score = -1.61, R) >triCas2.singleUn_1817 15298 58 + 22356 UACCCAAAAUUGACUUGCCCACUUUCGACGGUGCAUACGAAAAAUGGUUAGCAUUCAG ..........(((..((((((.(((((..........)))))..)))...))).))). ( -7.30, z-score = 0.26, R) >consensus UACCAAAAAUACAAGUUCCCACCUUUAAUGGAGAAGACAAAGAAUGGGAAUUUUUCAA ............(((((((...((((............))))...)))))))...... ( -3.38 = -2.82 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:26 2011