| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,177,814 – 22,177,908 |
| Length | 94 |
| Max. P | 0.712807 |
| Location | 22,177,814 – 22,177,908 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 69.35 |
| Shannon entropy | 0.61278 |
| G+C content | 0.42658 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -11.75 |
| Energy contribution | -11.68 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22177814 94 + 27905053 AAGUUGUUGUGUCUGUGUAACUUCUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGGCCUCGCAGCUCAGCUCAAAUGGAACAGCAA-------------- ...(((((((.(((((........((....))(((((((((.......)))))))))(.((((((......)).)))).)..))))))))))))-------------- ( -25.10, z-score = -0.32, R) >droSim1.chr3R 22024207 94 + 27517382 AAGUUGUUGUGUCUGUGUAACUUCUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGGCCUCGCAGCUCAGCUCAAAUGGAACAGCAA-------------- ...(((((((.(((((........((....))(((((((((.......)))))))))(.((((((......)).)))).)..))))))))))))-------------- ( -25.10, z-score = -0.32, R) >droSec1.super_13 965218 94 + 2104621 AAGUUGUUGUGUCUGUGUAACUUCUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGGCCUCGCAGCUCAGCUCAAAUGGAACAGCAA-------------- ...(((((((.(((((........((....))(((((((((.......)))))))))(.((((((......)).)))).)..))))))))))))-------------- ( -25.10, z-score = -0.32, R) >droYak2.chr3R 4528079 94 - 28832112 AAGUUGUUGUGUCUGUGUAACUUCUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGGCCUCGUAGCUCAGCUCAAAUGGAACAGCAA-------------- ...(((((((.(((((........((....))(((((((((.......)))))))))(.((((((......)).)))).)..))))))))))))-------------- ( -25.10, z-score = -0.75, R) >droEre2.scaffold_4820 4604954 94 - 10470090 AAGUUGUUGUGUCUGUGUAACUUCUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGGCCUCGCAGCUCAGCUCAAAUGGAACAGCAA-------------- ...(((((((.(((((........((....))(((((((((.......)))))))))(.((((((......)).)))).)..))))))))))))-------------- ( -25.10, z-score = -0.32, R) >droAna3.scaffold_13088 59818 89 + 569066 GAGCUGUUGUGUCUCUUUAACUUCUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUCGGCC--UGACUGCAGGGCAAACACAGCCA----------------- .....(((((((................(((((((((((((.......))))))))).))))(.((--((....)))).)..)))))))..----------------- ( -28.40, z-score = -1.55, R) >dp4.chr2 11969283 75 - 30794189 ---GAUCUGUCUGUGUAAC--UUUUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGGCA--GGAAGGAACAACAG-------------------------- ---.......((((((..(--(((((.((((((((((((((.......))))))))).))))).))--.))))..)).))))-------------------------- ( -21.30, z-score = -1.70, R) >droPer1.super_3 5826485 75 - 7375914 ---GAUCUGUCUGUGUAAC--UUUUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGGCA--GGAAGGAACAACAG-------------------------- ---.......((((((..(--(((((.((((((((((((((.......))))))))).))))).))--.))))..)).))))-------------------------- ( -21.30, z-score = -1.70, R) >droWil1.scaffold_181130 9663180 87 - 16660200 UGUUUUUUUUUUGAAGGCAACUUUUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUGGAUUUUCCA----AGCUAAA---GAACAGCAC-------------- ((((((((....((((....))))((....))(((((((((.......)))))))))((.(((.....)))----.)).)))---)))))....-------------- ( -22.10, z-score = -1.77, R) >droVir3.scaffold_13047 4703159 86 + 19223366 -----UUUGUCUGCCUAGUAACUUUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGUCUCUUCUUUUCACAACAACAACCACAA----------------- -----..((((.(((..........)))))))(((((((((.......))))))))).((((((...........))))))..........----------------- ( -18.10, z-score = -1.25, R) >droMoj3.scaffold_6540 12456715 103 - 34148556 -----UCUGUCUGUGUGGCAAUUUUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGUCUCCGGCUCUGACAUCAGGAAGAGGGCUAGCAGGAGGCAGGCAG -----.(((((((((..(((....((....))(((((((((.......))))))))).)))..)((((((((((............))))))....)))))))))))) ( -35.00, z-score = -1.39, R) >consensus AAGUUGUUGUGUCUGUGUAACUUCUGGUGACAGUGUUUAAUUGCUCAUAUUGAACACGUGUUGGCCUCGCAGCUCAGCUCAAAUGGAACAGCAA______________ .........................(.((((((((((((((.......))))))))).))))).)........................................... (-11.75 = -11.68 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:21 2011