| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,173,774 – 22,173,883 |
| Length | 109 |
| Max. P | 0.620525 |
| Location | 22,173,774 – 22,173,883 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.90 |
| Shannon entropy | 0.32326 |
| G+C content | 0.53146 |
| Mean single sequence MFE | -26.48 |
| Consensus MFE | -14.22 |
| Energy contribution | -15.33 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22173774 109 - 27905053 ------AUCGCCCAUUUUCCACCCCAUUUUUCCAGCGCUCUUGUCGUACAGCCCACAUUUUCCACCCACACUAUCUUCAUGUGUUCAGGUUCAGGUCGGUGUGGUAUGUGCGCCG ------....................................(.((((((..(((((((..(((((.((((.........))))...)))...))..)))))))..)))))).). ( -25.10, z-score = -2.16, R) >droSim1.chr3R 22020175 114 - 27517382 -UUGCAAGCGCCCAUUUUCCACCCCAUUUUCCCAGCGCUCUUGUCGUAUAGCCCACAUUUUCCACCCACACUAUCUUCAUGUGUUCAGGUUCAGGUCGGUGUGGUAUGUGCGCCG -.....(((((.......................)))))...(.((((((..(((((((..(((((.((((.........))))...)))...))..)))))))..)))))).). ( -28.00, z-score = -2.07, R) >droSec1.super_13 961276 114 - 2104621 -UUGCCAGCGCCCAUUUUCCACCCCAUUUUCCCAGCGCUCUUGUCGUAUAGCCCACAUUUUCCACCCACACUAUCUUCAUGUGUUCAGGUUCAGGUCGGUGUGGUAUGUGCGCCG -.....(((((.......................)))))...(.((((((..(((((((..(((((.((((.........))))...)))...))..)))))))..)))))).). ( -28.00, z-score = -2.15, R) >droYak2.chr3R 4523957 113 + 28832112 GUUUCCAGAGCCCAUUUUCCACCCCAUUUUCCGAGCGCUCUUGUCGUACACCCCACAUUUUCCACCCGCACUAUCUUCAU--GUUCAGGUUCAGGUCGGUGUGGUAUGUGCGCCG ......(((((.(.....................).))))).(.((((((..(((((((..(((((.(.((.........--)).).)))...))..)))))))..)))))).). ( -26.40, z-score = -2.00, R) >droEre2.scaffold_4820 4597978 113 + 10470090 UUUUCCAGCGCCCAUUUUCCACCCCAUUUUCCCAGCGCUCUUGUCGUACACCCCACAUUUUCCGCCCACACUAUCUUCAU--GUUCAGGUUCAGGUCGGUGUGGUAUGUGCGCCG ......(((((.......................)))))...(.((((((..(((((((..(((((...((.........--))...)))...))..)))))))..)))))).). ( -26.70, z-score = -2.94, R) >droAna3.scaffold_13088 55865 101 - 569066 ------------CCUAUUGCAGCCUCUGCUCCAGCCCCUUUCCACUUUUCCACCUGUUUUUCAACCCGCAGUAUCUUCAU--GUUCGGGUUCAGGUUGGUGUGGUAUGUGCACCG ------------......((((...))))....((......((((....(((((((......((((((.(((((....))--))))))))))))).))).)))).....)).... ( -24.70, z-score = -1.43, R) >consensus _UU_CCAGCGCCCAUUUUCCACCCCAUUUUCCCAGCGCUCUUGUCGUACACCCCACAUUUUCCACCCACACUAUCUUCAU__GUUCAGGUUCAGGUCGGUGUGGUAUGUGCGCCG ..........................................(.((((((..(((((((..(((((.....................)))...))..)))))))..)))))).). (-14.22 = -15.33 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:20 2011