| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,165,919 – 22,166,003 |
| Length | 84 |
| Max. P | 0.707764 |
| Location | 22,165,919 – 22,166,003 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 94.24 |
| Shannon entropy | 0.10018 |
| G+C content | 0.42075 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -21.64 |
| Energy contribution | -22.04 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22165919 84 + 27905053 UUCCAGUAAAGUGGACUUCGUGUAUAAAUCAGGUGU-GCCACACUUUAUGUCCUUUGAUAAGGA-GGGGAUUACCCCAAAAGGAUU .(((.((((((((.((.....))........((...-.)).)))))))).(((((....)))))-((((....))))....))).. ( -24.20, z-score = -1.62, R) >droEre2.scaffold_4820 4590067 85 - 10470090 UUCCAGUAAAGUGGGCUUCGUGUAUAAAUCAGGUGUUGCCAUACUUUAUGUCCUUUGAUAAGGA-GGGGCUUACCCCUAAAGGAUU .(((.(((((((((((..(.((.......)).)....))).)))))))).(((((....)))))-((((....))))....))).. ( -26.50, z-score = -1.85, R) >droYak2.chr3R 4515879 86 - 28832112 UUCCAGUCAAGUGGGCUUCGUGUAUAAAUCAGGUGUUGCCAUACUUUAUGUCCUUUGAUAAGGAAGGGGCUUACCUCGAAAGGAUU .(((..((..(((((((((...((((((...((.....))....))))))(((((....))))).)))))))))...))..))).. ( -22.30, z-score = -0.74, R) >droSec1.super_13 953451 84 + 2104621 UUCCAGUAAAGUGGGCUUCGUGUAUAAAUCAGGUGU-GCAACACUUUAUGUCCUUUGAUAAGGA-GGGGAUUACCCCAAAAGGAUU .(((.((((((((.((..(.((.......)).)...-))..)))))))).(((((....)))))-((((....))))....))).. ( -25.50, z-score = -2.10, R) >droSim1.chr3R 22012297 84 + 27517382 UUCCAGUAAAGUGGGCUUCGUGUAUAAAUCAGGUGU-GCCACACUUUAUGUCCUUUGAUAAGGA-GGAGAUUACCCCAAAAGGAUU .....(((((((((((..(.((.......)).)...-))).))))))))(((((((.....((.-((......)))).))))))). ( -24.40, z-score = -2.06, R) >consensus UUCCAGUAAAGUGGGCUUCGUGUAUAAAUCAGGUGU_GCCACACUUUAUGUCCUUUGAUAAGGA_GGGGAUUACCCCAAAAGGAUU .(((.(((((((((((..(.((.......)).)....))).)))))))).(((((....))))).((((....))))....))).. (-21.64 = -22.04 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:19 2011