| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,138,975 – 22,139,078 |
| Length | 103 |
| Max. P | 0.682690 |
| Location | 22,138,975 – 22,139,078 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 71.13 |
| Shannon entropy | 0.55483 |
| G+C content | 0.43695 |
| Mean single sequence MFE | -22.84 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.31 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22138975 103 + 27905053 --GUGGUC-AAAUGUCUUCAUCGGUUUGAUUUUCAAUUUGAUUGCAUUUAAGCGACAUC--CGGCAUAAGCUU----CCAGUCGUCCUUUGUC---GUCCUUUGUCCUCCUUAUA --(..(((-((((....(((......)))......)))))))..)......((((((..--((((........----...)))).....))))---))................. ( -20.60, z-score = -1.72, R) >droSim1.chr3R 21983587 93 + 27517382 --GUGGUC-AAAUGUCUUCAUCGGUUUGAUUUUCAAUUUGAUUGCAUUUAAGCGACAUC--CGGCAUAAGCUU----CCAGUCGUCCUUUGUC---GUCCUUAUA---------- --(..(((-((((....(((......)))......)))))))..)......((((((..--((((........----...)))).....))))---)).......---------- ( -20.60, z-score = -1.92, R) >droSec1.super_13 926449 93 + 2104621 --GUGGUC-AAAUGUCUUCAUCGGUUUGAUUUUCAAUUUGAUUGCAUUUAAGCGACAUC--CGGCAUAAGCUC----CCAGUCGCUCUUUGUCCUCCUUAUA------------- --(..(((-((((....(((......)))......)))))))..).....((((((...--.(((....))).----...))))))................------------- ( -22.30, z-score = -2.51, R) >droYak2.chr3R 4488061 91 - 28832112 --GUGGUC-AAAUGUCUUCAUCGGUUUGAUUUUCAAUUUGAUUGCAUUUAAGCGACAUC--CGGCAUAAGCUU----CAAGUCGUCCUUUGUC---CUCCUUA------------ --(..(((-((((....(((......)))......)))))))..)......(((((...--.(((....))).----...)))))........---.......------------ ( -19.30, z-score = -1.71, R) >droAna3.scaffold_12612 28681 91 + 30757 UUGUGGCC-GAAUGUCGUUACCGGCUUGAUUUUCAAUUUGAUUGCAUUUAAGCGACAACC-UGGCACAAGCUCCGAGUACUUUGUCCUUUGUA---------------------- (((((.((-(..(((((((....((..((((........)))))).....)))))))...-))))))))........................---------------------- ( -16.90, z-score = 0.86, R) >dp4.chr2 11929221 114 - 30794189 UUGCGGUA-AAAUGUCUUCAUCGGUUUGAUUUUCAAUUUGAUUGCAUUUAAGCGACAUCCCCGGCAUAAGCUUGUGUCCUGCUGCUGCAUGUCCUUGUCGCUUGUUCCCCCUGUC ..((((..-((((((..(((.....(((.....)))..)))..))))))((((((((.....(((((.(((..((.....)).)))..)))))..)))))))).......)))). ( -28.20, z-score = -1.85, R) >droPer1.super_3 5785551 114 - 7375914 UUGCGGUA-AAAUGUCUUCAUCGGUUUGAUUUUCAAUUUGAUUGCAUUUAAGCGACAUCCCCGGCAUAAGCUUGUGUCCUGCUGCUGCAUGUCCUUGUCGCUUGUUCCCCCUGUC ..((((..-((((((..(((.....(((.....)))..)))..))))))((((((((.....(((((.(((..((.....)).)))..)))))..)))))))).......)))). ( -28.20, z-score = -1.85, R) >droVir3.scaffold_13047 14562694 97 - 19223366 UUGUGGCCGAAAUGUCUUCAUCGGUUUGAUUUUCAAUUCGAUUGCAUUUAAGCCGUGUCC-UGGCAUAAGCUG----CGUGGCGAACAAGAAAGCAGCCAGC------------- ....(((..((((((....((((..(((.....)))..)))).))))))..)))((((..-..))))..((((----(.((.....)).....)))))....------------- ( -26.60, z-score = -0.25, R) >consensus __GUGGUC_AAAUGUCUUCAUCGGUUUGAUUUUCAAUUUGAUUGCAUUUAAGCGACAUC__CGGCAUAAGCUU____CCAGUCGUCCUUUGUC___GUCCUU_____________ ..((.(((...(((((...(((((.(((.....))).))))).((......)))))))....)))....))............................................ (-10.50 = -10.31 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:17 2011