Locus 11559

Sequence ID dm3.chr3R
Location 22,114,800 – 22,114,953
Length 153
Max. P 0.500000
window15883

overview

Window 3

Location 22,114,800 – 22,114,953
Length 153
Sequences 3
Columns 166
Reading direction reverse
Mean pairwise identity 86.55
Shannon entropy 0.18907
G+C content 0.31764
Mean single sequence MFE -31.40
Consensus MFE -27.36
Energy contribution -27.37
Covariance contribution 0.01
Combinations/Pair 1.09
Mean z-score -1.20
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr3R 22114800 153 - 27905053
------------CUAUCGA-UUUUGAUACUGCAAUUCAGAAAUCUGGCAUUUAAAACGUGUUCUUAUUUUUAAUUACAAUCAAGGGGGUCGAGCUCGAGCUUAAGCUUAAGCUUAUUAAUUUUAACAGCGUGGUAAAAUUAUUACGCCUCCACUCUAUUUAAUAUU
------------....((.-((((((...(((....(((....)))))).))))))))(((..(((....)))..))).....((((...(((((..(((....)))..))))).............((((((((....))))))))))))............... ( -31.80, z-score =  -1.59, R)
>droSim1.chr3R 21958842 166 - 27517382
CCAUCGAUUUUGAUACUGAUUUUUGAUACUGCAAUUCAGAAAUCUGACAUUUAAAACGUGCUCUUAUUUUUAUUUACAAUUAAGGGGGUCGAGCUCAAGCUUAAGCUUAAGCUUAUUAAUUUUAACAGCGUGGUAAAAUUGUUUCGCCUCUACUCUAUUUAAUAUU
.((.((.((((((....(((((((((.........)))))))))......)))))))))).......................((((((.(((((.((((....)))).)))))..((((((((.(.....).))))))))....))))))............... ( -30.50, z-score =  -0.66, R)
>droSec1.super_13 894801 163 - 2104621
CCAUCGAUAUCGAUACUGAUUUUUGAUACUGCAAUUCAGAAAUCUGUCAAUUAAAACGUGCUCUUAUUUCUAUUUACAAUUAAGGGGGUCGAGCUCGAGCUUAAGCUUAAGCUUAUUAAUUUUAA---AUUGGUAAAAUUGUUUCGCCUCUACUCUAUUUUAUAUU
..((((....))))((.(((((((((.........))))))))).))....................................((((((.(((((..(((....)))..)))))..((((((((.---.....))))))))....))))))............... ( -31.90, z-score =  -1.35, R)
>consensus
CCAUCGAU_U_GAUACUGAUUUUUGAUACUGCAAUUCAGAAAUCUGACAUUUAAAACGUGCUCUUAUUUUUAUUUACAAUUAAGGGGGUCGAGCUCGAGCUUAAGCUUAAGCUUAUUAAUUUUAACAGCGUGGUAAAAUUGUUUCGCCUCUACUCUAUUUAAUAUU
.................(((((((((.........))))))))).......................................((((((.(((((.((((....)))).)))))..((((((((.(.....).))))))))....))))))............... (-27.36 = -27.37 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:14 2011