| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,082,827 – 22,082,926 |
| Length | 99 |
| Max. P | 0.663806 |
| Location | 22,082,827 – 22,082,926 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 69.82 |
| Shannon entropy | 0.54595 |
| G+C content | 0.44339 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -13.09 |
| Energy contribution | -14.65 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22082827 99 - 27905053 GUAAUCUCUGGAUUGGAAUGCAUUCAC--------------------CUUGUUUUUGCAAUGAAUCCUAUCUAAUCGAUUGUUUGUCUACAGGCGUGACCUUCCUGUCUGGAGGUCAGU ...(((((..(((.((((.(...((((--------------------(((((....((((..((((..........))))..))))..))))).))))).)))).)))..))))).... ( -27.80, z-score = -2.11, R) >droSim1.chr3R 21926966 99 - 27517382 GUAAUGUCUGGAUUGGAAUGCUUACAC--------------------CUUGUUUUUGCAAUGAAUCCUAUCUAAUCGAUUGUUUGUCUACAGGCGUGACCUUCCUGUCUGGAGGUCAGU ...((((((((((((((.......((.--------------------.((((....)))))).......)))))))(((.....)))..)))))))(((((.((.....)))))))... ( -26.24, z-score = -1.61, R) >droSec1.super_13 862774 99 - 2104621 GUAAUCUCUGGAUUGGAAUGCUUACAC--------------------CUUGUUUUUGCAAUGAAUCCUAUCUAAUCGAUUGCUUGUCUACAGGCGUGACCUUCCUGUCUGGAGGUCAGU ...(((((..(((.((((.(.((((.(--------------------((.((....(((((((...........)).)))))......))))).))))).)))).)))..))))).... ( -28.00, z-score = -2.26, R) >droEre2.scaffold_4820 4504034 119 + 10470090 GUACUCCCUGGACUGGAAUGCUUGCACCUUGAGUUCUUCAAGUUGCACUUGGUUUUUCAAUGAAUCCUAUCUAAUCGAUUGCUUGUCCACAGGCGUGACCUUCCUGUCCGGAGGUCAGU .....((((((((.((((....((((.((((((...)))))).))))...((((...(....((((..........))))(((((....)))))).)))))))).)))))).))..... ( -34.30, z-score = -1.38, R) >droYak2.chr3R 4430756 119 + 28832112 GUAUUCUCUGGAUUGGAAUACUUGCACCUUGAGUUCUUCAAAUCGCACUUGGUUGUUCAAUGAAUCCUAUCUAAUCGAUUGCUUGUCUACAGGCGUGACCUUCCUGUCUGGAGGUCAGU ....((((..(((.((((....(((...(((((...)))))...)))...(((..(......((((..........))))(((((....))))))..))))))).)))..))))..... ( -28.30, z-score = -0.32, R) >droWil1.scaffold_181130 6917994 78 - 16660200 -----------------------------------------GAUAAAUAGCUAAUUCCUGCGACUCUUAACCGAUUGUUAUCCCCUCUACAGGUGUUACCUUCCUGUCUGGCGGUCAGU -----------------------------------------........((........))............((((....((((...(((((.........)))))..)).)).)))) ( -12.40, z-score = 0.42, R) >consensus GUAAUCUCUGGAUUGGAAUGCUUACAC____________________CUUGUUUUUGCAAUGAAUCCUAUCUAAUCGAUUGCUUGUCUACAGGCGUGACCUUCCUGUCUGGAGGUCAGU ..........(((((((...............................((((....)))).(....)..)))))))....(((((....))))).((((((((......)))))))).. (-13.09 = -14.65 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:08 2011