| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,077,896 – 22,077,996 |
| Length | 100 |
| Max. P | 0.897558 |
| Location | 22,077,896 – 22,077,996 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 80.93 |
| Shannon entropy | 0.37346 |
| G+C content | 0.53820 |
| Mean single sequence MFE | -31.72 |
| Consensus MFE | -18.91 |
| Energy contribution | -21.23 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22077896 100 - 27905053 AACGAACUCUGGAUCCACUGGAAAACCAGUGGCCAUCAAAGGGAAACCUCGAAGGCACCGGAAUCCACGUCGGACAGCUCCCAAAUGCGUUACGUUGGCC ((((((((((((...((((((....))))))(((.((..(((....))).)).))).))))).(((.....)))..((........))))).)))).... ( -34.80, z-score = -2.17, R) >droEre2.scaffold_4820 4499027 100 + 10470090 AACGAACUCUGGAUCCACUGGAAGGCCAGUGGCCAUCAAAUGGAAACCUCGGAGGCACCGGAAUCCACGUCGGACAGCUCCCAAAUGCGUUACGUUAGCC ((((((((((((...((((((....))))))(((.((....(....)....))))).))))).(((.....)))..((........))))).)))).... ( -30.90, z-score = -0.70, R) >droAna3.scaffold_13340 23612794 79 - 23697760 -------ACUGAGCUC--UGAGGAUUCACCGGACAUCA-----GGACAUCAAAAGCACUGGGAUACAGGUUGGACUAGUCCCUAAUGC-UUACG------ -------.((((..((--((.(......)))))..)))-----)........(((((..(((((..((......)).)))))...)))-))...------ ( -21.10, z-score = -1.04, R) >droYak2.chr3R 4425620 99 + 28832112 AACGAACUCUGGAUCCACUGGAGAACCAGUGGCCAUCAAAGGGAAACCUCCGAGGCACCGGAAUCCAC-UCCGACAGCUCCCAAAUGCGUUACGUUAGCC ((((((((((((...((((((....))))))(((.((..(((....)))..))))).)))))......-.......((........))))).)))).... ( -33.90, z-score = -2.75, R) >droSec1.super_13 857847 100 - 2104621 AACGAACUCUGGAUCCACUGGAAAACCAGUGGCCAUCAAAGGGAAACCUCGAAGGCACCGGAAUCCACGUCGGACAGCUCCCAAAUGCGUUACGUUAGCC ((((((((((((...((((((....))))))(((.((..(((....))).)).))).))))).(((.....)))..((........))))).)))).... ( -34.80, z-score = -2.75, R) >droSim1.chr3R 21922001 100 - 27517382 AACGAACUCUGGAUCCACUGGAAAACCAGUGGCCAUCAAAGGGAAACCUCGAAGGCACCGGAAUCCACUUCGGACAGCUCCCAAAUGCGUUACGUUAGCC ((((((((((((...((((((....))))))(((.((..(((....))).)).))).))))).(((.....)))..((........))))).)))).... ( -34.80, z-score = -3.07, R) >consensus AACGAACUCUGGAUCCACUGGAAAACCAGUGGCCAUCAAAGGGAAACCUCGAAGGCACCGGAAUCCACGUCGGACAGCUCCCAAAUGCGUUACGUUAGCC ((((((((((((...((((((....))))))(((.((..(((....))).)).))).))))).........(((....))).......))).)))).... (-18.91 = -21.23 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:06 2011