| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,054,920 – 22,055,021 |
| Length | 101 |
| Max. P | 0.793027 |
| Location | 22,054,920 – 22,055,021 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.41 |
| Shannon entropy | 0.45287 |
| G+C content | 0.43955 |
| Mean single sequence MFE | -27.16 |
| Consensus MFE | -14.10 |
| Energy contribution | -15.34 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22054920 101 + 27905053 CGUAGUUAUAAAAAGACAGUUAACUAUAAUCAAGAGCCUUCAUGUGAAGCGGGCGUGUAGGGCUGA--------GUGGGUGUGGUUCCAAUGC-GAUUUAAGGUAAUUGA- ................((((((.((..((((...(((((((((((.......))))).))))))(.--------.((((......))))...)-))))..)).)))))).- ( -23.80, z-score = -0.85, R) >droAna3.scaffold_13340 23587235 87 + 23697760 CGUAGUUA---AAAGCUAAAUAAAUA-AAGUAAAAGUC---------AGGGGGCACAUGCGACUUA-----------AGCAUGUUCUCCAGAUGGUUUUAGGGAAACCAAA ..((((..---...))))........-.....(((..(---------(.((((.((((((......-----------.)))))).))))...))..))).((....))... ( -24.70, z-score = -3.86, R) >droSim1.chr3R 21898286 101 + 27517382 CGUAGUUAUAAAAAGACAGUUAACUAUAAUCAAGAGCCUUCAUGUGAAGCGGGCGUGUAGGGCUGA--------GUGGGUGUGGUUCCAAUGC-GAUUUAAGGUAAUUGA- ................((((((.((..((((...(((((((((((.......))))).))))))(.--------.((((......))))...)-))))..)).)))))).- ( -23.80, z-score = -0.85, R) >droYak2.chr3R 4402316 110 - 28832112 CGUAGUUAUAAAAAGACAGUUAGCUAUAAUCAAGAGCCUUCAUGCGAGGCGGUCGUGUGGGGCUGAUUGGGUGAGUGGGUGUGGCCCCAAUGCCGAUUUAAGGUAAUUGA- ................((((((.((..((((...(((((.(((((((.....)))))))))))).....(((...((((......))))..)))))))..)).)))))).- ( -33.40, z-score = -1.46, R) >droEre2.scaffold_4820 4472636 101 - 10470090 CGUAGUUAUAAAAAGACAGUUAGCUAUAAUCAAGAGCCUUCAUGCGAGGCGGGCGUGUAGGGCUGA--------GUGGGUGUGGCUGCAGUGC-GAUUUAAGGUAAUUGG- ..(((((((..(((..((.(((((((((..((..(((((((((((.......))))).))))))..--------.))..)))))))).).)).-..)))...))))))).- ( -30.10, z-score = -1.75, R) >consensus CGUAGUUAUAAAAAGACAGUUAACUAUAAUCAAGAGCCUUCAUGCGAAGCGGGCGUGUAGGGCUGA________GUGGGUGUGGUUCCAAUGC_GAUUUAAGGUAAUUGA_ ................((((((.((..((((...(((((((((((.......))))).))))))...........((((......)))).....))))..)).)))))).. (-14.10 = -15.34 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:03 2011