| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,052,208 – 22,052,344 |
| Length | 136 |
| Max. P | 0.977684 |
| Location | 22,052,208 – 22,052,344 |
|---|---|
| Length | 136 |
| Sequences | 5 |
| Columns | 146 |
| Reading direction | reverse |
| Mean pairwise identity | 79.02 |
| Shannon entropy | 0.35730 |
| G+C content | 0.31657 |
| Mean single sequence MFE | -33.88 |
| Consensus MFE | -19.08 |
| Energy contribution | -20.28 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22052208 136 - 27905053 CAAGAUUAAGUGUGCUUUGUGUUGAGAAUUACCAUCACCAUGGUGGUAAUUA-UAACAAAUUUG---------UGAAUACUUUAUCACAAAACUGGGUACAAAAGUGGUUAUGCAUUUUUGAUCUCCCGUAAAGCUAAAAAUUAUU .............(((((((((((..((((((((((.....)))))))))).-)))))..((((---------(((........)))))))...(((..((((((((......))))))))....))).))))))........... ( -36.10, z-score = -3.18, R) >droSim1.chr3R 21895587 136 - 27517382 CAAGAUUAAGUGUGCUUUGCGUUGAGAAUUACCAUCAGAAUGGUGGUAAUUA-UAACAAAUUUG---------UGAAUACUUUAUCACAAAACAGGGUACAAAAGUGGUUAUGCAUUUUUGAUCUCCCGUAAAGCUAAAAAUUAUU .............(((((((((((..((((((((((.....)))))))))).-))))...((((---------(((........)))))))...(((..((((((((......))))))))....))))))))))........... ( -39.90, z-score = -4.62, R) >droSec1.super_13 832241 136 - 2104621 CAAGAUUAAGUGUGCUUUGUGUUCAGAAUUACCAUCAGAAUGGUGGUAAUUA-UAACAAAUUUG---------UGAAUACUUUAUCACAAAACUGGGUACAAAAGUGGUUAUGCAUUUUUGAUCUCACGUAAAGCUAAAAAUUAUU ..((((((((.((((((((((..(((((((((((((.....)))))))))).-.......((((---------(((........))))))).)))..)))))).........)))).))))))))..................... ( -38.00, z-score = -4.20, R) >droYak2.chr3R 4399586 145 + 28832112 CAAGAUUAAGUGUGCUUUGUCUGGUGUAUUACCAUCAGAAUAGUGGUAAUUAAUGGCAAUUAUAACAAAUUGAUGAAUACUUAAUUACACAAUU-UAUACGAAACUAGGUAUGCAUUUUUGAUCUCCUCUAAAGCCAAAAGUUAUU ..((((((((.((((..(..(((((..((((((((.......))))))))................((((((.(((((.....))).)))))))-).......)))))..).)))).))))))))..................... ( -26.80, z-score = -0.39, R) >droEre2.scaffold_4820 4469906 122 + 10470090 CGAGAUUAAUGGUGCUUUGUGUUGAGCAUUACCAUCAGAAUGGUGGCAAUUAGUAGCAAUUAUAACG-----------------------AAUU-UAUACAACACUAGGUAUGCAUUUUUGAUCUCCUCCAAAGCCAAAAGUUAUU .((((((((..((((...((((((.(((((((((((.....)))))....)))).))...(((((..-----------------------...)-)))))))))).......))))..)))))))).................... ( -28.60, z-score = -1.50, R) >consensus CAAGAUUAAGUGUGCUUUGUGUUGAGAAUUACCAUCAGAAUGGUGGUAAUUA_UAACAAAUUUG_________UGAAUACUUUAUCACAAAACUGGGUACAAAAGUGGUUAUGCAUUUUUGAUCUCCCGUAAAGCUAAAAAUUAUU ..((((((((.((((.((((......((((((((((.....))))))))))....))))......................................(((....))).....)))).))))))))..................... (-19.08 = -20.28 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:02 2011