| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,704,059 – 8,704,140 |
| Length | 81 |
| Max. P | 0.869530 |
| Location | 8,704,059 – 8,704,140 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 63.63 |
| Shannon entropy | 0.62769 |
| G+C content | 0.47075 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -11.39 |
| Energy contribution | -11.20 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8704059 81 + 23011544 ------------AGGUCUGUCAAAAUCGGACAUGAAUU--GGCCACCACCAGUGGCACGUGUUCAAUGUCUUUUCGAGCUGUUUGCUAUACUAUU ------------.(((.((.((((.((((((((((((.--.(((((.....)))))....)))).)))))....)))....)))).)).)))... ( -20.90, z-score = -1.02, R) >droSim1.chr2L 8489283 68 + 22036055 ------------AGGUCUGACAGUAUCGGACAUGAUUU--GGCCACCACACGUGGCACGUGUUCAACGUCUUGUCGU-CUAUU------------ ------------..((((((.....))))))(((((..--((((((.....)))))((((.....)))))..)))))-.....------------ ( -20.20, z-score = -1.00, R) >droSec1.super_3 4185748 81 + 7220098 ------------AGGUCUGACAGUAUCGGAAAUGAUUU--GGCCACCACACGUGGCACGUGUUCAACGUCUUGUCGGGUUGUUUGCUCUACUAUU ------------.........((((..(.(((..((((--((((((.....)))))((((.....)))).....)))))..))).)..))))... ( -20.70, z-score = -0.06, R) >droYak2.chr2L 11352743 76 + 22324452 ------------AGGUCUAUCGGAAUCGGACACGAUUU--UGCCACCACACGUGGCACGUGUUCAUCGUCUUGUCG---UGUUUUUUUUACCU-- ------------((((......(((..(((((((((..--.(((((.....)))))(((.......)))...))))---)))))..)))))))-- ( -20.00, z-score = -1.20, R) >droEre2.scaffold_4929 9297975 70 + 26641161 ------------AGGUCUACCAAUAUCAGACAUGAUUU--UGCCACCACACGUGGCACGUGUUCAACGACUUCUCGGUUUACUG----------- ------------.(((..(((.......((((((....--((((((.....))))))))))))....((....)))))..))).----------- ( -17.70, z-score = -1.81, R) >droWil1.scaffold_181071 1144826 86 + 1211509 AAAUGGCAAACCACCUGAAGCGCAAUUUGGGACGAUUUCUAGCCAG-ACUUUUGGCACGUGUUCAACUUAGUCAUGGCAUUUCUGUC-------- ....((((.....((..((......))..))..........(((((-(((.(((((....).))))...)))).)))).....))))-------- ( -18.60, z-score = 0.24, R) >consensus ____________AGGUCUAACAGAAUCGGACAUGAUUU__GGCCACCACACGUGGCACGUGUUCAACGUCUUGUCGG_CUGUUUG_U________ ..............(((((.......))))).((((.....(((((.....)))))((((.....))))...))))................... (-11.39 = -11.20 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:41 2011