| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,023,967 – 22,024,059 |
| Length | 92 |
| Max. P | 0.523425 |
| Location | 22,023,967 – 22,024,059 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 68.15 |
| Shannon entropy | 0.61228 |
| G+C content | 0.43292 |
| Mean single sequence MFE | -19.31 |
| Consensus MFE | -8.17 |
| Energy contribution | -8.42 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22023967 92 + 27905053 GAACGCCAUUAAAAAUGGCGGCGGUUUAACU--GGAAAAUCGAUAAC----------CGAGUCGCAGGAGCAAAAGGAGUGAACAGCAAAAUGGAAAAGAAUGC-------------- ...((((((.....))))))((.(((((.((--.((...(((.....----------))).))((....))...))...))))).)).................-------------- ( -19.90, z-score = -1.44, R) >droEre2.scaffold_4820 4447452 92 - 10470090 GAAAGCCAUUAAAAAUGGCGGCGGUUUAACU--GGAAAAUCGAUACC----------CGACUCGCAGGAGCAAAAGGAGUGAACAGGCAAAGUGGAAAGAAUGC-------------- ....(((((.....)))))..((.(((..((--((.....)..((((----------(..(((....))).....)).)))..)))..))).))..........-------------- ( -15.60, z-score = 0.81, R) >droYak2.chr3R 4376854 92 - 28832112 GAAAGCCAUUAAAAAUGGCGGCGGUUUAACU--GGAAAAUCGAUACC----------CGAGUCGCAGUAGCAAAAGGAGUGAACGGCAAAAUGGAAAAGAAUGC-------------- ....(((((.....))))).((.((((((((--(((...(((.....----------))).)).))))...........))))).)).................-------------- ( -19.50, z-score = -0.85, R) >droSec1.super_13 810321 92 + 2104621 GAACGCCAUUAAAAAUGGCGGCGGUUUAACU--GGAAAAUCGAUACC----------CGAGUCGCAGGAGCAAAAGGAGUGAACAGCAAAAUGGAAAAGAAUGC-------------- ...((((((.....))))))((.(((((.((--.((...(((.....----------))).))((....))...))...))))).)).................-------------- ( -19.90, z-score = -0.99, R) >droSim1.chr3R 21873088 92 + 27517382 GAACGCCAUUAAAAAUGGCGGCGGUUUAACU--GGAAAAUCGAUACC----------CGAGUCGCAGGAGCAAAAGGAGUGAACAGCAAAAUGGAAAAGAAUGC-------------- ...((((((.....))))))((.(((((.((--.((...(((.....----------))).))((....))...))...))))).)).................-------------- ( -19.90, z-score = -0.99, R) >droAna3.scaffold_13340 23562653 107 + 23697760 GAAAGCCAUUAAAAAUGGCGUCGGUUUAACU--GGAAAAUCGAUAUCGU--------CGUACCACUGGAGU-AAAGGCGUGAAAAGCGAAAAGCUAAAAGCGAAAUGGAAUAGAAUGC ((..(((((.....)))))((((((((....--...)))))))).))..--------....(((((.....-..)).(((....(((.....)))....)))...))).......... ( -20.40, z-score = -0.26, R) >dp4.chr2 11803446 92 - 30794189 GAAAGCCAUUAAAAAUGGCGACGGUUUAACU--GGAAAAUCGAUAGAC-----AAGGC-----CCGCCAGUGGAAGGCGUCAAAAGUAA--AACAGAAUAGAAUGC------------ ....(((((.....)))))((((.(((.(((--((....((.......-----..)).-----...)))))..))).))))........--...............------------ ( -21.20, z-score = -1.98, R) >droPer1.super_3 5660001 92 - 7375914 AAAAGCCAUUAAAAAUGGCGACGGUUUAACU--GGAAAAUCGAUAGGC-----AAGGC-----CCGCCAGUGGAAGGCGUCAAAAGUAA--AACAGAAUAGAAUGC------------ ....(((((.....)))))((((.(((.(((--((..........(((-----...))-----)..)))))..))).))))........--...............------------ ( -22.20, z-score = -1.74, R) >droWil1.scaffold_181130 6854838 82 + 16660200 GAAAGCCAUUAAAAAUGGCGACGGUUUAACU--GGAAAAUCGAUA-------------GAGGGACAAGAA--AAAGGCGUCAAAAACUGAAUG--GAAUGC----------------- ....(((((.....)))))((((.(((..((--......((....-------------))......))..--.))).))))............--......----------------- ( -14.20, z-score = -1.58, R) >droMoj3.scaffold_6540 12255225 86 - 34148556 GAAAGCCAUUAAAAAUGGCGACGGUUUAACACGGGAAAAUCGAUAGA------------------ACCAGCGAAAGACGUGAAAAGUGA-AAACUGAUAAAA-UGC------------ ....(((((.....)))))..((((((..(((((.............------------------.)).((....).).......))).-))))))......-...------------ ( -15.94, z-score = -2.09, R) >droVir3.scaffold_13047 4497767 101 + 19223366 GAAAGCCAUUAAAAAAGGCGGCGGCUUAACUUGGGAAAAUCGAUAGGUUGAAGAAAGCGUA---CGUCAGGGAAAGUCGUGAGAAGUGA-AAACUGAUAAAA-UGC------------ ....(((.........))).(((((((..(((((......((.((.(((......))).))---)))))))..)))))))....(((..-..))).......-...------------ ( -21.80, z-score = -1.69, R) >droGri2.scaffold_14906 9956636 105 + 14172833 GAAAGCCAUUAAAAAUGGCGGCGUUUUAA-GUGGGAAAAUCGAUAGGGCGAAGACAGCGUGUACCGCCAGCGAAAGAAGUGAAAAGUAAUAAACUGAUAAAAAUGC------------ ....(((((.....))))).(((((((..-.........(((....((((...((.....))..))))..)))...........(((.....)))....)))))))------------ ( -21.20, z-score = -0.91, R) >consensus GAAAGCCAUUAAAAAUGGCGGCGGUUUAACU__GGAAAAUCGAUAGC__________CGAGUCGCAGGAGCAAAAGGAGUGAAAAGCAAAAAGCAAAAGAAAGC______________ ....(((((.....)))))..((((((.........))))))............................................................................ ( -8.17 = -8.42 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:01 2011