| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,011,243 – 22,011,334 |
| Length | 91 |
| Max. P | 0.941122 |
| Location | 22,011,243 – 22,011,334 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 65.54 |
| Shannon entropy | 0.63827 |
| G+C content | 0.49738 |
| Mean single sequence MFE | -25.71 |
| Consensus MFE | -12.46 |
| Energy contribution | -12.63 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22011243 91 - 27905053 --UGGC-GGCGGCUAGGCAACACCUAGGUAACCGAUACCCUAUCAGGUUAUCCGGACAUGAUAACCAAUCUUCCGGUGAAUCAACCGCACCAGA------------- --(((.-.(((((((((.....)))))((((((((((...)))).))))))(((((...(((.....))).)))))........)))).)))..------------- ( -29.00, z-score = -1.94, R) >droSim1.chr3R 21860099 91 - 27517382 --UGGC-GGCUGCUAGGCAACACCUAGGUAACCGAUAGCCUAUCAGGUUAUCCGGACAUGAUAACCAAUCUGCCGGUGAAUCAACCGCACCAGA------------- --..((-((.(((((((.....)))))...((((((((((.....))))))).((.((.(((.....))))))))))....)).))))......------------- ( -29.00, z-score = -1.67, R) >droSec1.super_13 797431 91 - 2104621 --UGGC-GGCUGCUAGGCAACACCUAGGUAACCGAUAUCCUAUCAGGUUAUCCGGACAUGAUAACCAAUCUGCCGGUGAAUCAACCGCACCAGA------------- --..((-((.(((((((.....)))))((((((((((...)))).))))))((((.((.(((.....))))))))).....)).))))......------------- ( -27.50, z-score = -1.48, R) >droEre2.scaffold_4820 4432655 92 + 10470090 --UGGCGGGCUGCUAGGCAACACCUGGAAAACCGAUACCUUAUCAGGUUAUCCGGACAUGAUACCCAAUCAGCCGGUGAAUCAACCGCCACAGA------------- --(((((((((....)))..((((.(((.((((((((...)))).)))).)))((...((((.....)))).))))))......))))))....------------- ( -34.10, z-score = -3.39, R) >droYak2.chr3R 4362907 91 + 28832112 --UGGG-GGCUGCUAGGCAACACCUAGAAAACCGAUACCUUAUCAGGUUAUCCGGACAUGAUAACCAAUCUGCCGGUGAAUCAACCGCACCAGA------------- --((((-(....(((((.....)))))....))((((...)))).(((((((.......)))))))....(((.(((......)))))))))..------------- ( -25.60, z-score = -1.23, R) >droWil1.scaffold_181130 9319325 77 + 16660200 -------UGUAGCCAGGCCAGAC---GAUAG-----ACCUUAUCACCUUAUCCGGAUGGGCUAG--GAGCGAUAAGUGAGCCAACAAAUUGAAG------------- -------........(((((..(---....)-----..((((((.(((((.((.....)).)))--).).)))))))).)))............------------- ( -15.10, z-score = 0.29, R) >droGri2.scaffold_14906 10986732 103 - 14172833 UAUAUCAGGCUGUC--GCAUUGC-UAAAUUGAUAAGCUCUUAUCUGAUAAUUCAAA-GCAAUUUCCGAGCCACCUAUCAGUCGAUGAGUCAAGGUCUCUUAUCUUAA .......((((...--..(((((-(.....(((((....)))))(((....))).)-))))).....))))...........((((((.........)))))).... ( -19.70, z-score = -0.50, R) >consensus __UGGC_GGCUGCUAGGCAACACCUAGAUAACCGAUACCUUAUCAGGUUAUCCGGACAUGAUAACCAAUCUGCCGGUGAAUCAACCGCACCAGA_____________ .......(((..(((((.....)))))..................(((((((.......))))))).....)))(((......)))..................... (-12.46 = -12.63 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:00 2011