| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,006,921 – 22,007,004 |
| Length | 83 |
| Max. P | 0.685954 |
| Location | 22,006,921 – 22,007,004 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 73.99 |
| Shannon entropy | 0.48988 |
| G+C content | 0.43458 |
| Mean single sequence MFE | -17.83 |
| Consensus MFE | -8.10 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22006921 83 + 27905053 UAUCCCAAAAAAAAAAUCUGCAUAAAUUCCGCACCCUCAUCAGCGAGUG--AGGGCGGAAUAUGUUAGACCCC-UACAUCGAUUGA ................((((((((..((((((..((((((......)))--))))))))))))).))))....-............ ( -20.90, z-score = -2.77, R) >droSim1.chr3R 21855789 81 + 27517382 UAUCCCAAAAAAA--AUCUGCAUAAAUUCCGCACCCUCAUCAGCGAGUG--AGGGCGGAAUAUGUUAGACCCC-UACAUCGAUUGA .............--.((((((((..((((((..((((((......)))--))))))))))))).))))....-............ ( -20.90, z-score = -2.71, R) >droSec1.super_13 793143 80 + 2104621 UAUCCCAAAAAAA---UCUGCAUAAAUUCCGCACCCUUAUCAGCGAAUG--AGGGCGGAAUAUGUUAGACCCC-UACAUCGAUUGA .............---((((((((..((((((..((((((......)))--))))))))))))).))))....-............ ( -18.40, z-score = -2.13, R) >droEre2.scaffold_4820 4428307 81 - 10470090 UAUCCU-AAAAAA---UCUGCAUAAAUUCCGCACCCUCAUCAGUGAGUGUGAGGGCGGAACAUGCUAGACCCC-UACAUCGAUUGA ......-......---(((((((...((((((..((((((........)))))))))))).)))).)))....-............ ( -20.90, z-score = -2.15, R) >droYak2.chr3R 4358514 81 - 28832112 UAUCCUCAAAAAA---UCUGCAUAAAUUCCGCACCCUCAUCAGCGAGUA--AGGGCGGUACAUGUUCGACCCCCUACAUCGAUUGA .............---..(((.........)))......((((((((((--.(((.(((.(......)))))))))).))).)))) ( -15.50, z-score = -0.90, R) >droPer1.super_3 5639456 74 - 7375914 UAUUCAAUAGCAACAAAAUCAAAGAACUUCUCGCCCUGUACAGUGAGUAUUCAAAGGGGCUAAUCUAGAGACUU------------ ............................(((((((((((((.....)))).....))))).......))))...------------ ( -10.41, z-score = 0.22, R) >consensus UAUCCCAAAAAAA___UCUGCAUAAAUUCCGCACCCUCAUCAGCGAGUG__AGGGCGGAAUAUGUUAGACCCC_UACAUCGAUUGA ...................(((((..((((((.(((((......))).....)))))))))))))..................... ( -8.10 = -9.00 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:45:00 2011