| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,984,606 – 21,984,726 |
| Length | 120 |
| Max. P | 0.985241 |
| Location | 21,984,606 – 21,984,726 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.33 |
| Shannon entropy | 0.04626 |
| G+C content | 0.47324 |
| Mean single sequence MFE | -35.76 |
| Consensus MFE | -33.96 |
| Energy contribution | -34.16 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21984606 120 + 27905053 UUCACACUUUUCCACGCCCUCAGCCAUUUUAUAUUCGCAGACAUCUGUCGGUCGUGGAAUGGCAUCUGAUAGUCGGGGACGCGGAAAAUGUCAAGUACUCGCAUAAGUGAACACAUAACC ...(((.((((((.((.((((.((((((((((..((((((....))).)))..))))))))))....(.....))))).)).)))))))))...((..((((....))))..))...... ( -37.90, z-score = -3.06, R) >droSim1.chr2L 16100678 120 - 22036055 UUCACACUUUUCCACGCCCUCAGCCAUUUUAUAUUCGCAGACAUCUGUCGGUCGUGGAAUGGCAUCUGAUAGUCGGGGACGCGGAAAAUGUCAAGUACUCGCAUAAGUGAACACAUAACC ...(((.((((((.((.((((.((((((((((..((((((....))).)))..))))))))))....(.....))))).)).)))))))))...((..((((....))))..))...... ( -37.90, z-score = -3.06, R) >droSec1.super_13 770541 120 + 2104621 UUCACACUUUUCCACGCCCUCAGCCAUUUUAUAUUCGCACACAUCUGUCGGUCGUGGAAUGGCAUCUGAUAGUCGGGGACGCGGAAAAUGUCAAGUACUCGCAUAAGUGAACACAUAACG ...(((.((((((.((.((((.((((((((((..(((.(((....))))))..))))))))))....(.....))))).)).)))))))))...((..((((....))))..))...... ( -35.10, z-score = -2.51, R) >droYak2.chr3R 4335889 119 - 28832112 UUCACACUUUUCU-CGCCUUCAGCCAUUUUAUAUUCGCAGACAUCUGUCGGUCGUGGAAUGGCAUCUGAUAGUCGGGGACGCGGAAAAUGUCAAGUACUCGCAUAAGUGAACACAUAACC ...(((.(((((.-(((.(((.((((((((((..((((((....))).)))..))))))))))..(((.....)))))).)))))))))))...((..((((....))))..))...... ( -35.20, z-score = -2.53, R) >droEre2.scaffold_4820 4405226 119 - 10470090 UUCACACUUUUCU-CGCCCUCAGCCAUUUUAUAUUCGCAGACAUCUGUCGGUCGCGGAAUGGCAUCUGAUAGUCGGGGACGCGGAAAAUGUCAAGUACUCGCAUAAGAGAACACAUAACC ...(((.(((((.-(((((((.(((((((..(..((((((....))).)))..)..)))))))....(.....)))))..)))))))))))...((.(((......))).))........ ( -32.70, z-score = -1.77, R) >consensus UUCACACUUUUCCACGCCCUCAGCCAUUUUAUAUUCGCAGACAUCUGUCGGUCGUGGAAUGGCAUCUGAUAGUCGGGGACGCGGAAAAUGUCAAGUACUCGCAUAAGUGAACACAUAACC ...(((.((((((.((.((((.((((((((((..((((((....))).)))..))))))))))....(.....))))).)).)))))))))...((..((((....))))..))...... (-33.96 = -34.16 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:57 2011