| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,954,096 – 21,954,165 |
| Length | 69 |
| Max. P | 0.898172 |
| Location | 21,954,096 – 21,954,165 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 62.13 |
| Shannon entropy | 0.62463 |
| G+C content | 0.32451 |
| Mean single sequence MFE | -10.85 |
| Consensus MFE | -4.66 |
| Energy contribution | -5.78 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21954096 69 + 27905053 -------------CAUUUUCUAUAUGUAAGGCACAUUUAGCUUUAUAUAUUUUUGGUUGUGUUUCAUUUUUCGUGACUUUCA -------------(((..((.(((((((((((.......)))))))))))....))..)))..((((.....))))...... ( -12.60, z-score = -3.09, R) >droSim1.chr3R 21806063 69 + 27517382 -------------CAUUUUCUAUAUGUAAUGCACAUUUAGCUUUAUAUAUUUUUGGUUGUGUUUCAUUUUUCGUGACUUUCA -------------(((..((.((((((((.((.......)).))))))))....))..)))..((((.....))))...... ( -8.80, z-score = -1.40, R) >droSec1.super_13 739769 69 + 2104621 -------------CAUUUUCUAUAUGUAAGGCACAUUCAGCUUUAUAUAAUUUUGGUUGUGUUUCAUUUUUCGUGACUUUCA -------------.........((((((((((.......)))))))))).....(((..((..........))..))).... ( -12.30, z-score = -2.70, R) >droEre2.scaffold_4820 4372736 80 - 10470090 CUUUCUCUAAGUGCGUUUUCUGAAUGUAGGGCACAUAUAGCUCUAAAU--UUUUGGUUGUGUUUCGUUUUUCGUGAUUUCCA ........(((..((....(..((..((((((.......))))))...--.))..).))..))).................. ( -11.40, z-score = -0.01, R) >droWil1.scaffold_181130 15597252 53 + 16660200 -------------CAACAGCUCUAUUGAAGGUAGAAAGAGCGUAACAAAAGCCCUCAUAGACUGCA---------------- -------------...(((.(((((.((.(((..................))).))))))))))..---------------- ( -9.17, z-score = -0.58, R) >consensus _____________CAUUUUCUAUAUGUAAGGCACAUUUAGCUUUAUAUAAUUUUGGUUGUGUUUCAUUUUUCGUGACUUUCA ......................((((((((((.......))))))))))................................. ( -4.66 = -5.78 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:52 2011